Galaxy Introduction Peaks2Genes - Part 1 1.0
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Associated Tutorial
This workflows is part of the tutorial From peaks to genes, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Anne Pajon, Clemens Blank, Bérénice Batut, Björn Grüning, Nicola Soranzo, Dilmurat Yusuf, Sarah Peter, Helena Rasche
Tutorial Contributor(s): Teresa Müller, Armin Dadras, Helena Rasche, Björn Grüning, Saskia Hiltemann, Nicola Soranzo, Bérénice Batut, Bert Droesbeke, Gildas Le Corguillé, Nate Coraor, David López, Hans-Rudolf Hotz, Clemens Blank, Dave Clements, William Durand, Cyril Monjeaud, Niall Beard, Maria Doyle
Funder(s): ELIXIR Europe, de.NBI, University of Freiburg
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Genes | Genes | n/a |
|
| Peaks | Peaks | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | Select last | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0 |
| 3 | Replace Text | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3 |
| 4 | Get flanks | toolshed.g2.bx.psu.edu/repos/devteam/get_flanks/get_flanks1/1.0.0 |
| 5 | Replace Text | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3 |
| 6 | Replace Text | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3 |
| 7 | Convert Genomic Intervals To BED | CONVERTER_interval_to_bed_0 |
| 8 | Intersect | toolshed.g2.bx.psu.edu/repos/devteam/intersect/gops_intersect_1/1.0.0 |
| 9 | Group | Grouping1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| chr_count | chr_count | n/a |
|
Version History
master
Creators and Submitter
Views: 1184 Downloads: 171 Runs: 0
Created: 2nd Jun 2025 at 10:55
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Teams: Galaxy Training Network
Organizations: Galaxy
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