GTN Tutorial: Data manipulation Olympics - all steps and exercises 1.0
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Associated Tutorial
This workflows is part of the tutorial Data Manipulation Olympics, available in the GTN
Thanks to...
Tutorial Author(s): Saskia Hiltemann, Yongbin Li
Tutorial Contributor(s): Helena Rasche, Scott Cain, Saskia Hiltemann, Yongbin Li, Donny Vrins, Björn Grüning, Daniela Schneider
Grants(s): Gallantries: Bridging Training Communities in Life Science, Environment and Health
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| country-information.tsv | country-information.tsv | n/a |
|
| olympics.tsv | olympics.tsv | n/a |
|
| olympics_2022.tsv | olympics_2022.tsv | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 3 | Line/Word/Character count | wc_gnu |
| 4 | tabular-to-csv | tabular_to_csv |
| 5 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 |
| 6 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 |
| 7 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 |
| 8 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 |
| 9 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 |
| 10 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 |
| 11 | Filter | Filter1 |
| 12 | Filter | Filter1 |
| 13 | Count | Count1 |
| 14 | Count | Count1 |
| 15 | Count | Count1 |
| 16 | Count | Count1 |
| 17 | Datamash | toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0 |
| 18 | Count | Count1 |
| 19 | Datamash | toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0 |
| 20 | Filter | Filter1 |
| 21 | Filter | Filter1 |
| 22 | Filter | Filter1 |
| 23 | Filter | Filter1 |
| 24 | Filter | Filter1 |
| 25 | Filter | Filter1 |
| 26 | Filter | Filter1 |
| 27 | Compute | toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.6 |
| 28 | Compute | toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.6 |
| 29 | Cut | Cut1 |
| 30 | Column Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.1 |
| 31 | Column Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.1 |
| 32 | Column Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.1 |
| 33 | Cut | Cut1 |
| 34 | Cut | Cut1 |
| 35 | Datamash | toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0+galaxy2 |
| 36 | Datamash | toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0+galaxy2 |
| 37 | Datamash | toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0+galaxy2 |
| 38 | Datamash | toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0+galaxy2 |
| 39 | Datamash | toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0+galaxy2 |
| 40 | Count | Count1 |
| 41 | Column Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.1 |
| 42 | Split file | toolshed.g2.bx.psu.edu/repos/bgruening/split_file_on_column/tp_split_on_column/0.4 |
| 43 | Join two Datasets | join1 |
| 44 | Remove beginning | Remove beginning1 |
| 45 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 |
| 46 | Filter | Filter1 |
| 47 | Cut | Cut1 |
| 48 | Unique | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sorted_uniq/1.1.0 |
| 49 | Count | Count1 |
| 50 | Datamash | toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0+galaxy2 |
| 51 | Concatenate datasets | cat1 |
| 52 | Filter | Filter1 |
| 53 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 |
| 54 | Remove beginning | Remove beginning1 |
| 55 | Select first | Show beginning1 |
| 56 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 |
| 57 | Unique | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sorted_uniq/1.1.0 |
| 58 | Concatenate datasets | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1 |
| 59 | Join two Datasets | join1 |
| 60 | Cut | Cut1 |
| 61 | Line/Word/Character count | wc_gnu |
Version History
master
Creators and Submitter
Views: 1166 Downloads: 167 Runs: 0
Created: 2nd Jun 2025 at 10:55
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