feature_extraction 6.0
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This workflows is part of the tutorial Analyse HeLa fluorescence siRNA screen, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Till Korten, Leonid Kostrykin
Tutorial Author(s): Thomas Wollmann, Leonid Kostrykin
Tutorial Contributor(s): Helena Rasche, Saskia Hiltemann, Björn Grüning, Leonid Kostrykin, Thomas Wollmann
Funder(s): ELIXIR Europe
Steps
| ID | Name | Description |
|---|---|---|
| 2 | Filter 2-D image | toolshed.g2.bx.psu.edu/repos/imgteam/2d_simple_filter/ip_filter_standard/1.12.0+galaxy1 |
| 3 | Threshold image | toolshed.g2.bx.psu.edu/repos/imgteam/2d_auto_threshold/ip_threshold/0.18.1+galaxy3 |
| 4 | Convert binary image to label map | toolshed.g2.bx.psu.edu/repos/imgteam/binary2labelimage/ip_binary_to_labelimage/0.5+galaxy0 |
| 5 | Extract image features | toolshed.g2.bx.psu.edu/repos/imgteam/2d_feature_extraction/ip_2d_feature_extraction/0.18.1+galaxy0 |
| 6 | Filter label map by rules | toolshed.g2.bx.psu.edu/repos/imgteam/2d_filter_segmentation_by_features/ip_2d_filter_segmentation_by_features/0.0.1-4 |
| 7 | Extract image features | toolshed.g2.bx.psu.edu/repos/imgteam/2d_feature_extraction/ip_2d_feature_extraction/0.18.1+galaxy0 |
Version History
master
Creators and Submitter
Views: 1138 Downloads: 176 Runs: 0
Created: 2nd Jun 2025 at 10:56
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