Workflow constructed from history 'CRISPR tutorial Kenji' 1.0
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Run on GalaxyCRISPR screen analysis
Associated Tutorial
This workflows is part of the tutorial CRISPR screen analysis, available in the GTN
Thanks to...
Tutorial Author(s): Maria Doyle, Kenji Fujihara, Twishi Gulati
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Calabrese_SetA_Guides_Reference.csv | Calabrese_SetA_Guides_Reference.csv | n/a |
|
| Input Dataset Collection | Input Dataset Collection | n/a |
|
| broadgpp-brunello-library-contents.csv | broadgpp-brunello-library-contents.csv | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 3 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
| 4 | Cutadapt | toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/3.4+galaxy1 |
| 5 | MultiQC | toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1 |
| 6 | MAGeCK count | toolshed.g2.bx.psu.edu/repos/iuc/mageck_count/mageck_count/0.5.9.2.4 |
| 7 | MAGeCKs test | toolshed.g2.bx.psu.edu/repos/iuc/mageck_test/mageck_test/0.5.9.2.1 |
Version History
master
Creators and Submitter
Views: 1309 Downloads: 197 Runs: 1
Created: 2nd Jun 2025 at 10:57
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Teams: Galaxy Training Network
Organizations: Galaxy
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