GECKO pairwise comparison 1.0
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Run on GalaxyA workflow designed to compare two sequences using GECKO, extract repeats and perform multiple sequence alignment
Associated Tutorial
This workflows is part of the tutorial From small to large-scale genome comparison, available in the GTN
Thanks to...
Tutorial Author(s): Esteban Perez-Wohlfeil
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Query sequence | #main/Query sequence | n/a |
|
| Reference sequence | #main/Reference sequence | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | Gecko | toolshed.g2.bx.psu.edu/repos/iuc/gecko/gecko/1.2 |
| 3 | Text reformatting | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2 |
| 4 | ClustalW | toolshed.g2.bx.psu.edu/repos/devteam/clustalw/clustalw/2.1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| ClustalW on input dataset(s): clustal | #main/ClustalW on input dataset(s): clustal | n/a |
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| ClustalW on input dataset(s): dnd | #main/ClustalW on input dataset(s): dnd | n/a |
|
| Gecko on input dataset(s): CSV | #main/Gecko on input dataset(s): CSV | n/a |
|
| _anonymous_output_3 | #main/_anonymous_output_3 | n/a |
|
| _anonymous_output_4 | #main/_anonymous_output_4 | n/a |
|
Version History
master
Creators and Submitter
Views: 1138 Downloads: 174 Runs: 0
Created: 2nd Jun 2025 at 10:57
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Organizations: Galaxy
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