RaceID Workflow 1.0
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Run on GalaxyDownstream Single-cell RNA analysis with RaceID
Associated Tutorial
This workflows is part of the tutorial Downstream Single-cell RNA analysis with RaceID, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Mehmet Tekman, Alex Ostrovsky
Tutorial Author(s): Mehmet Tekman, Alex Ostrovsky
Tutorial Contributor(s): Pavankumar Videm, Saskia Hiltemann, Helena Rasche, Björn Grüning, Bérénice Batut, Mehmet Tekman, Stéphanie Robin, Anthony Bretaudeau, Simon Bray
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Tabular Matrix | #main/Tabular Matrix | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | Initial processing using RaceID | toolshed.g2.bx.psu.edu/repos/iuc/raceid_filtnormconf/raceid_filtnormconf/0.2.3+galaxy0 |
| 2 | Clustering using RaceID | toolshed.g2.bx.psu.edu/repos/iuc/raceid_clustering/raceid_clustering/0.2.3+galaxy0 |
| 3 | Lineage computation using StemID | toolshed.g2.bx.psu.edu/repos/iuc/raceid_trajectory/raceid_trajectory/0.2.3+galaxy0 |
| 4 | Cluster Inspection using RaceID | toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspectclusters/raceid_inspectclusters/0.2.3+galaxy0 |
| 5 | Cluster Inspection using RaceID | toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspectclusters/raceid_inspectclusters/0.2.3+galaxy0 |
| 6 | Cluster Inspection using RaceID | toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspectclusters/raceid_inspectclusters/0.2.3+galaxy0 |
| 7 | Lineage Branch Analysis using StemID | toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspecttrajectory/raceid_inspecttrajectory/0.2.3+galaxy0 |
| 8 | Lineage Branch Analysis using StemID | toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspecttrajectory/raceid_inspecttrajectory/0.2.3+galaxy0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_1 | #main/_anonymous_output_1 | n/a |
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| _anonymous_output_10 | #main/_anonymous_output_10 | n/a |
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| _anonymous_output_11 | #main/_anonymous_output_11 | n/a |
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| _anonymous_output_12 | #main/_anonymous_output_12 | n/a |
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| _anonymous_output_13 | #main/_anonymous_output_13 | n/a |
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| _anonymous_output_14 | #main/_anonymous_output_14 | n/a |
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| _anonymous_output_15 | #main/_anonymous_output_15 | n/a |
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| _anonymous_output_16 | #main/_anonymous_output_16 | n/a |
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| _anonymous_output_17 | #main/_anonymous_output_17 | n/a |
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| _anonymous_output_18 | #main/_anonymous_output_18 | n/a |
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| _anonymous_output_19 | #main/_anonymous_output_19 | n/a |
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| _anonymous_output_2 | #main/_anonymous_output_2 | n/a |
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| _anonymous_output_20 | #main/_anonymous_output_20 | n/a |
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| _anonymous_output_21 | #main/_anonymous_output_21 | n/a |
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| _anonymous_output_22 | #main/_anonymous_output_22 | n/a |
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| _anonymous_output_3 | #main/_anonymous_output_3 | n/a |
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| _anonymous_output_4 | #main/_anonymous_output_4 | n/a |
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| _anonymous_output_5 | #main/_anonymous_output_5 | n/a |
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| _anonymous_output_6 | #main/_anonymous_output_6 | n/a |
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| _anonymous_output_7 | #main/_anonymous_output_7 | n/a |
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| _anonymous_output_8 | #main/_anonymous_output_8 | n/a |
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| _anonymous_output_9 | #main/_anonymous_output_9 | n/a |
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Version History
master
Creators and Submitter
Views: 1186 Downloads: 165 Runs: 0
Created: 2nd Jun 2025 at 10:58
AttributionsNone
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Teams: Galaxy Training Network
Organizations: Galaxy
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