Genome annotation with Maker (short) 1.0
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Associated Tutorial
This workflows is part of the tutorial Genome annotation with Maker (short), available in the GTN
Thanks to...
Tutorial Author(s): Anthony Bretaudeau
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Augustus model | #main/Augustus model | n/a |
|
| or cDNA | #main/EST and/or cDNA | n/a |
|
| Genome sequence | #main/Genome sequence | n/a |
|
| Proteins | #main/Proteins | n/a |
|
| SNAP model | #main/SNAP model | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 5 | Fasta Statistics | toolshed.g2.bx.psu.edu/repos/simon-gladman/fasta_stats/fasta-stats/1.0.0 |
| 6 | Busco | toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/3.0.2+galaxy1 |
| 7 | Maker | toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.10 |
| 8 | Map annotation ids | toolshed.g2.bx.psu.edu/repos/iuc/maker_map_ids/maker_map_ids/2.31.10 |
| 9 | Genome annotation statistics | toolshed.g2.bx.psu.edu/repos/iuc/jcvi_gff_stats/jcvi_gff_stats/0.8.4 |
| 10 | gffread | toolshed.g2.bx.psu.edu/repos/devteam/gffread/gffread/2.2.1.1 |
| 11 | JBrowse | toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.4+galaxy3 |
| 12 | Busco | toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/3.0.2+galaxy1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Busco summary final round | #main/Busco summary final round | n/a |
|
| _anonymous_output_10 | #main/_anonymous_output_10 | n/a |
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| _anonymous_output_11 | #main/_anonymous_output_11 | n/a |
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| _anonymous_output_12 | #main/_anonymous_output_12 | n/a |
|
| _anonymous_output_13 | #main/_anonymous_output_13 | n/a |
|
| _anonymous_output_14 | #main/_anonymous_output_14 | n/a |
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| _anonymous_output_15 | #main/_anonymous_output_15 | n/a |
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| _anonymous_output_16 | #main/_anonymous_output_16 | n/a |
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| _anonymous_output_6 | #main/_anonymous_output_6 | n/a |
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| _anonymous_output_7 | #main/_anonymous_output_7 | n/a |
|
| _anonymous_output_8 | #main/_anonymous_output_8 | n/a |
|
| _anonymous_output_9 | #main/_anonymous_output_9 | n/a |
|
Version History
master
Creators and Submitter
Views: 1194 Downloads: 166 Runs: 0
Created: 2nd Jun 2025 at 10:58
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Organizations: Galaxy
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