Workflow Methylation Seq 3.0
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Run on GalaxyDNA Methylation data analysis
Associated Tutorial
This workflows is part of the tutorial DNA Methylation data analysis, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Joachim Wolff, Devon Ryan, Verena Moosmann
Tutorial Contributor(s): Pavankumar Videm, Wolfgang Maier, Saskia Hiltemann, Helena Rasche, Nicola Soranzo, Bérénice Batut, Gildas Le Corguillé, William Durand, Björn Grüning, Niall Beard
Steps
| ID | Name | Description |
|---|---|---|
| 9 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.68 |
| 10 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.68 |
| 11 | bwameth | toolshed.g2.bx.psu.edu/repos/iuc/bwameth/bwameth/0.2.0.3 |
| 12 | Replace column | toolshed.g2.bx.psu.edu/repos/bgruening/replace_column_by_key_value_file/replace_column_with_key_value_file/0.1 |
| 13 | metilene | toolshed.g2.bx.psu.edu/repos/rnateam/metilene/metilene/0.2.6.1 |
| 14 | MethylDackel | toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0 |
| 15 | MethylDackel | toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0 |
| 16 | Select last | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0 |
| 17 | Select last | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0 |
| 18 | computeMatrix | toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.1.0 |
| 19 | Text reformatting | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.0 |
| 20 | computeMatrix | toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.1.0 |
| 21 | plotProfile | toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_profile/deeptools_plot_profile/2.5.1.1.0 |
Version History
master
Creators and Submitter
Views: 1350 Downloads: 210 Runs: 0
Created: 2nd Jun 2025 at 10:58
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Teams: Galaxy Training Network
Organizations: Galaxy
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These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!
