Workflow Type: Galaxy

Evaluating and ranking a set of pathways based on multiple metrics

Associated Tutorial

This workflows is part of the tutorial Evaluating and ranking a set of pathways based on multiple metrics, available in the GTN

Thanks to...

Tutorial Author(s): Kenza Bazi-Kabbaj, Thomas Duigou, Joan Hérisson, Guillaume Gricourt, Ioana Popescu, Jean-Loup Faulon

gtn star logo followed by the word workflows

Inputs

ID Name Description Type
Biomass reaction ID #main/Biomass reaction ID n/a
  • string
Cell compartment ID #main/Cell compartment ID n/a
  • string
Chassis where to produce target from #main/Chassis where to produce target from n/a
  • File
Heterologous pathways #main/Heterologous pathways n/a
  • array containing
    • File

Steps

ID Name Description
4 Flux balance analysis toolshed.g2.bx.psu.edu/repos/iuc/rpfba/rpfba/5.12.1
5 Thermo toolshed.g2.bx.psu.edu/repos/tduigou/rpthermo/rpthermo/5.12.1
6 Score Pathway toolshed.g2.bx.psu.edu/repos/tduigou/rpscore/rpscore/5.12.1
7 Rank Pathways toolshed.g2.bx.psu.edu/repos/tduigou/rpranker/rpranker/5.12.1

Outputs

ID Name Description Type
Ranked Pathways #main/Ranked Pathways n/a
  • File
_anonymous_output_1 #main/_anonymous_output_1 n/a
  • File
_anonymous_output_2 #main/_anonymous_output_2 n/a
  • File
_anonymous_output_3 #main/_anonymous_output_3 n/a
  • File

Version History

1.0 (earliest) Created 2nd Jun 2025 at 10:59 by GTN Bot

Added/updated 4 files


Open master 15d51e2
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Views: 51   Downloads: 7   Runs: 0

Created: 2nd Jun 2025 at 10:59

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