Pathway Analysis 1.0
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Run on GalaxyEvaluating and ranking a set of pathways based on multiple metrics
Associated Tutorial
This workflows is part of the tutorial Evaluating and ranking a set of pathways based on multiple metrics, available in the GTN
Thanks to...
Tutorial Author(s): Kenza Bazi-Kabbaj, Thomas Duigou, Joan Hérisson, Guillaume Gricourt, Ioana Popescu, Jean-Loup Faulon
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Biomass reaction ID | #main/Biomass reaction ID | n/a |
|
| Cell compartment ID | #main/Cell compartment ID | n/a |
|
| Chassis where to produce target from | #main/Chassis where to produce target from | n/a |
|
| Heterologous pathways | #main/Heterologous pathways | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 4 | Flux balance analysis | toolshed.g2.bx.psu.edu/repos/iuc/rpfba/rpfba/5.12.1 |
| 5 | Thermo | toolshed.g2.bx.psu.edu/repos/tduigou/rpthermo/rpthermo/5.12.1 |
| 6 | Score Pathway | toolshed.g2.bx.psu.edu/repos/tduigou/rpscore/rpscore/5.12.1 |
| 7 | Rank Pathways | toolshed.g2.bx.psu.edu/repos/tduigou/rpranker/rpranker/5.12.1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Ranked Pathways | #main/Ranked Pathways | n/a |
|
| _anonymous_output_1 | #main/_anonymous_output_1 | n/a |
|
| _anonymous_output_2 | #main/_anonymous_output_2 | n/a |
|
| _anonymous_output_3 | #main/_anonymous_output_3 | n/a |
|
Version History
master
Creators and Submitter
Views: 1309 Downloads: 190 Runs: 0
Created: 2nd Jun 2025 at 10:59
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