Assembly polishing - upgraded 2.0
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This workflows is part of the tutorial Large genome assembly and polishing, available in the GTN
Features
- Includes a Galaxy Workflow Report
- Uses subworkflows
Thanks to...
Workflow Author(s): Anna Syme
Tutorial Author(s): Anna Syme
Steps
| ID | Name | Description |
|---|---|---|
| 4 | Racon polish with long reads, x4 - upgraded | n/a |
| 5 | Medaka polish | toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus_pipeline/medaka_consensus_pipeline/1.7.2+galaxy1 |
| 6 | Fasta statistics after Racon long read polish | toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0 |
| 7 | Fasta statistics after Medaka polish | toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0 |
| 8 | Racon polish with Illumina reads (R1 only), x2 - upgraded | n/a |
| 9 | Fasta statistics after Racon short read polish | toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0 |
Version History
master
Creators and Submitter
Views: 1200 Downloads: 168 Runs: 0
Created: 2nd Jun 2025 at 10:59
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Organizations: Galaxy
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