Assess genome quality - upgraded 2.0
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Run on GalaxyAssociated Tutorial
This workflows is part of the tutorial Large genome assembly and polishing, available in the GTN
Features
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Anna Syme
Tutorial Author(s): Anna Syme
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Polished assembly | Polished assembly | n/a |
|
| Reference genome | Reference genome | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | Busco: assess assembly | toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.5.0+galaxy0 |
| 3 | Quast: assess assembly | toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Busco short summary | Busco short summary | n/a |
|
| _anonymous_output_1 | _anonymous_output_1 | n/a |
|
| Quast on input dataset(s): HTML report | Quast on input dataset(s): HTML report | n/a |
|
Version History
master
Creators and Submitter
Views: 1357 Downloads: 218 Runs: 0
Created: 2nd Jun 2025 at 10:59
AttributionsNone
Related items
Teams: Galaxy Training Network
Organizations: Galaxy
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Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
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These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!
