Workflow Type: Galaxy

Associated Tutorial

This workflows is part of the tutorial Large genome assembly and polishing, available in the GTN

Features

Thanks to...

Workflow Author(s): Anna Syme

Tutorial Author(s): Anna Syme

gtn star logo followed by the word workflows

Inputs

ID Name Description Type
Input file: Illumina reads R1 Input file: Illumina reads R1 n/a
  • File
Input file: Illumina reads R2 Input file: Illumina reads R2 n/a
  • File
Input file: long reads Input file: long reads n/a
  • File

Steps

ID Name Description
3 Nanoplot: long reads toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.42.0+galaxy1
4 FastQC on R1 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy0
5 FastQC on R2 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy0
6 MultiQC: combine fastQC reports toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1

Outputs

ID Name Description Type
NanoPlot on input dataset(s): HTML report NanoPlot on input dataset(s): HTML report n/a
  • File
MultiQC on input dataset(s): Webpage MultiQC on input dataset(s): Webpage n/a
  • File

Version History

2.0 (earliest) Created 2nd Jun 2025 at 10:59 by GTN Bot

Added/updated 4 files


Open master 37238fc
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Views: 49   Downloads: 5   Runs: 0

Created: 2nd Jun 2025 at 10:59

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