Data QC - upgraded 2.0
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This workflows is part of the tutorial Large genome assembly and polishing, available in the GTN
Features
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Anna Syme
Tutorial Author(s): Anna Syme
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Input file: Illumina reads R1 | Input file: Illumina reads R1 | n/a |
|
| Input file: Illumina reads R2 | Input file: Illumina reads R2 | n/a |
|
| Input file: long reads | Input file: long reads | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 3 | Nanoplot: long reads | toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.42.0+galaxy1 |
| 4 | FastQC on R1 | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy0 |
| 5 | FastQC on R2 | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy0 |
| 6 | MultiQC: combine fastQC reports | toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| NanoPlot on input dataset(s): HTML report | NanoPlot on input dataset(s): HTML report | n/a |
|
| MultiQC on input dataset(s): Webpage | MultiQC on input dataset(s): Webpage | n/a |
|
Version History
master
Creators and Submitter
Views: 1354 Downloads: 214 Runs: 0
Created: 2nd Jun 2025 at 10:59
AttributionsNone
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Teams: Galaxy Training Network
Organizations: Galaxy
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