Trim and filter reads - fastp - upgraded 2.0
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This workflows is part of the tutorial Large genome assembly and polishing, available in the GTN
Features
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Anna Syme
Tutorial Author(s): Anna Syme
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Illumina reads R1 | #main/Illumina reads R1 | n/a |
|
| Illumina reads R2 | #main/Illumina reads R2 | n/a |
|
| long reads | #main/long reads | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 3 | fastp on short reads | toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.4+galaxy0 |
| 4 | fastp on long reads | toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.4+galaxy0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| fastp filtered R1 reads | #main/fastp filtered R1 reads | n/a |
|
| fastp filtered R2 reads | #main/fastp filtered R2 reads | n/a |
|
| fastp filtered long reads | #main/fastp filtered long reads | n/a |
|
| fastp report on long reads html | #main/fastp report on long reads html | n/a |
|
| fastp report on long reads json | #main/fastp report on long reads json | n/a |
|
| fastp report on short reads html | #main/fastp report on short reads html | n/a |
|
| fastp report on short reads json | #main/fastp report on short reads json | n/a |
|
Version History
master
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Views: 253 Downloads: 33 Runs: 0
Created: 2nd Jun 2025 at 11:00
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