Trim and filter reads - fastp - upgraded
2.0

Workflow Type: Galaxy

Associated Tutorial

This workflows is part of the tutorial Large genome assembly and polishing, available in the GTN

Features

Thanks to...

Workflow Author(s): Anna Syme

Tutorial Author(s): Anna Syme

gtn star logo followed by the word workflows

Inputs

ID Name Description Type
Illumina reads R1 #main/Illumina reads R1 n/a
  • File
Illumina reads R2 #main/Illumina reads R2 n/a
  • File
long reads #main/long reads n/a
  • File

Steps

ID Name Description
3 fastp on short reads toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.4+galaxy0
4 fastp on long reads toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.4+galaxy0

Outputs

ID Name Description Type
fastp filtered R1 reads #main/fastp filtered R1 reads n/a
  • File
fastp filtered R2 reads #main/fastp filtered R2 reads n/a
  • File
fastp filtered long reads #main/fastp filtered long reads n/a
  • File
fastp report on long reads html #main/fastp report on long reads html n/a
  • File
fastp report on long reads json #main/fastp report on long reads json n/a
  • File
fastp report on short reads html #main/fastp report on short reads html n/a
  • File
fastp report on short reads json #main/fastp report on short reads json n/a
  • File

Version History

2.0 (earliest) Created 2nd Jun 2025 at 11:00 by GTN Bot

Added/updated 4 files


Open master eb4a1cb
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Created: 2nd Jun 2025 at 11:00

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