Racon polish with long reads, x4 - upgraded 2.0
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This workflows is part of the tutorial Large genome assembly and polishing, available in the GTN
Features
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Anna Syme
Tutorial Author(s): Anna Syme
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Assembly to be polished | Assembly to be polished | n/a |
|
| long reads | long reads | n/a |
|
| minimap setting (for long reads) | minimap setting (for long reads) | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 3 | Minimap2: map long reads to assembly | Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0 |
| 4 | Racon: polish 1 | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1 |
| 5 | Minimap2: map long reads to polished assembly 1 | Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0 |
| 6 | Racon: polish 2 | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1 |
| 7 | Minimap2: map long reads to polished assembly 2 | Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0 |
| 8 | Racon: polish 3 | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1 |
| 9 | Minimap2: map long reads to polished assembly 3 | Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0 |
| 10 | Racon: polish 4 | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Assembly polished by long reads using Racon | Assembly polished by long reads using Racon | n/a |
|
Version History
master
Creators and Submitter
Views: 1366 Downloads: 206 Runs: 0
Created: 2nd Jun 2025 at 11:00
AttributionsNone
Related items
Teams: Galaxy Training Network
Organizations: Galaxy
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