Simtext training workflow 1.0
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Run on GalaxyIn this workflow the similarity among set of search queries (e.g. genes) is analyzed based on the associated vocabulary in PubMed. The last tool is an interactive tool that enables the inspection of the data.
Associated Tutorial
This workflows is part of the tutorial Text-mining with the SimText toolset, available in the GTN
Thanks to...
Workflow Author(s):
Tutorial Author(s): Marie Gramm, Dennis Lal group, Daniel Blankenberg
Steps
| ID | Name | Description |
|---|---|---|
| 1 | PubMed query | toolshed.g2.bx.psu.edu/repos/iuc/pubmed_by_queries/pubmed_by_queries/0.0.2 |
| 2 | PMIDs to PubTator | toolshed.g2.bx.psu.edu/repos/iuc/pmids_to_pubtator_matrix/pmids_to_pubtator_matrix/0.0.2 |
| 3 | simtext_app | interactive_tool_simtext_app |
Version History
master
Creators and Submitter
Views: 1137 Downloads: 158 Runs: 0
Created: 2nd Jun 2025 at 11:00
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Related items
Teams: Galaxy Training Network
Organizations: Galaxy
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