Racon polish with Illumina reads (R1 only), x2 - upgraded 2.0
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This workflows is part of the tutorial Large genome assembly and polishing, available in the GTN
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Workflow Author(s): Anna Syme
Tutorial Author(s): Anna Syme
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Assembly to be polished | #main/Assembly to be polished | n/a |
|
| Illumina reads, R1, in fastq.gz format | #main/Illumina reads, R1, in fastq.gz format | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | Minimap2 round 1: map reads to assembly | toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0 |
| 3 | Racon round 1: polish assembly | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1 |
| 4 | Minimap2 round 2: map reads to assembly | toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0 |
| 5 | Racon round 2: polish assembly | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Assembly polished by short reads using Racon | #main/Assembly polished by short reads using Racon | n/a |
|
Version History
master
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Views: 1189 Downloads: 188 Runs: 0
Created: 2nd Jun 2025 at 11:00
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