kmer counting - meryl - upgraded 2.0
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This workflows is part of the tutorial Large genome assembly and polishing, available in the GTN
Features
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Anna Syme
Tutorial Author(s): Anna Syme
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Illumina reads R1 | #main/Illumina reads R1 | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | Meryl - count kmers | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
| 2 | Meryl - generate histogram | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
| 3 | Genomescope | toolshed.g2.bx.psu.edu/repos/iuc/genomescope/genomescope/2.0+galaxy2 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| GenomeScope on input dataset(s) Linear plot | #main/GenomeScope on input dataset(s) Linear plot | n/a |
|
| GenomeScope on input dataset(s) Log plot | #main/GenomeScope on input dataset(s) Log plot | n/a |
|
| GenomeScope on input dataset(s) Transformed linear plot | #main/GenomeScope on input dataset(s) Transformed linear plot | n/a |
|
| GenomeScope on input dataset(s) Transformed log plot | #main/GenomeScope on input dataset(s) Transformed log plot | n/a |
|
| Meryl on input dataset(s): read-db.meryldb | #main/Meryl on input dataset(s): read-db.meryldb | n/a |
|
| _anonymous_output_1 | #main/_anonymous_output_1 | n/a |
|
| _anonymous_output_2 | #main/_anonymous_output_2 | n/a |
|
| _anonymous_output_3 | #main/_anonymous_output_3 | n/a |
|
| _anonymous_output_4 | #main/_anonymous_output_4 | n/a |
|
Version History
master
Creators and Submitter
Views: 31 Downloads: 2 Runs: 0
Created: 2nd Jun 2025 at 11:00
AttributionsNone
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Teams: Galaxy Training Network
Organizations: Galaxy
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