Intro to Genome Assembly 5.0
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Associated Tutorial
This workflows is part of the tutorial An Introduction to Genome Assembly, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Simon Gladman
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| mutant_R1.fastq | #main/mutant_R1.fastq | n/a |
|
| mutant_R2.fastq | #main/mutant_R2.fastq | n/a |
|
| wildtype.fna | #main/wildtype.fna | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 3 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
| 4 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
| 5 | FASTQ interlacer | toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_interlacer/fastq_paired_end_interlacer/1.2.0.1+galaxy0 |
| 6 | MultiQC | toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.7 |
| 7 | velveth | toolshed.g2.bx.psu.edu/repos/devteam/velvet/velveth/1.2.10.1 |
| 8 | velvetg | toolshed.g2.bx.psu.edu/repos/devteam/velvet/velvetg/1.2.10.1 |
| 9 | Quast | toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2+galaxy0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| fastqc_html | #main/fastqc_html | n/a |
|
| fastqc_txt | #main/fastqc_txt | n/a |
|
| multiqc_report | #main/multiqc_report | n/a |
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| multiqc_stats | #main/multiqc_stats | n/a |
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| output_pairs | #main/output_pairs | n/a |
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| output_singles | #main/output_singles | n/a |
|
| quast_report_html | #main/quast_report_html | n/a |
|
| quast_report_pdf | #main/quast_report_pdf | n/a |
|
| velvet_contigs | #main/velvet_contigs | n/a |
|
| velvet_stats | #main/velvet_stats | n/a |
|
| velveth_out | #main/velveth_out | n/a |
|
Version History
master
Creators and Submitter
Views: 1183 Downloads: 178 Runs: 4
Created: 2nd Jun 2025 at 11:01
AttributionsNone
Related items
Teams: Galaxy Training Network
Organizations: Galaxy
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