Debruijn Graph 4.0
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Run on GalaxyDe Bruijn Graph Assembly
Associated Tutorial
This workflows is part of the tutorial De Bruijn Graph Assembly, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Simon Gladman, Helena Rasche, Saskia Hiltemann
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| mutant_R1 | mutant_R1 | n/a |
|
| mutant_R2 | mutant_R2 | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | VelvetOptimiser | toolshed.g2.bx.psu.edu/repos/simon-gladman/velvetoptimiser/velvetoptimiser/2.2.6 |
| 3 | SPAdes | toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0+galaxy1 |
| 4 | Fasta Statistics | toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/1.0.1 |
| 5 | Fasta Statistics | toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/1.0.1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| fasta_stats_velvet | fasta_stats_velvet | n/a |
|
| fasta_stats_spades | fasta_stats_spades | n/a |
|
Version History
master
Creators and Submitter
Views: 1215 Downloads: 164 Runs: 5
Created: 2nd Jun 2025 at 11:01
AttributionsNone
Related items
Teams: Galaxy Training Network
Organizations: Galaxy
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