Primer design of a virus family (imported from uploaded file) 1.0
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Run on GalaxyPrimer design of related virus gene sequences.
Associated Tutorial
This workflows is part of the tutorial Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Wolfgang Maier
Tutorial Author(s): Verena Moosmann, Elischa Berger, Wolfgang Maier
Tutorial Contributor(s): Wolfgang Maier, Verena Moosmann
Grants(s): BeYond-COVID
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Input virus gene sequences | #main/Input virus gene sequences | Dataset consists of different virus gene sequences. |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | Multiple alignment | Multiple alignment of various virus genomes of dataset input toolshed.g2.bx.psu.edu/repos/rnateam/mafft/rbc_mafft/7.526+galaxy1 |
| 2 | Primer design | Design of primer with multiple alignment from MAFFT. toolshed.g2.bx.psu.edu/repos/iuc/varvamp/varvamp/1.2.2+galaxy0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| outputAlignment | #main/outputAlignment | n/a |
|
| primer_seqs | #main/primer_seqs | n/a |
|
| primers_bed | #main/primers_bed | n/a |
|
| varvamp_log | #main/varvamp_log | n/a |
|
Version History
master
Creators and Submitter
Views: 1283 Downloads: 188 Runs: 0
Created: 2nd Jun 2025 at 11:01
AttributionsNone
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