Ecoli Comparison 3.0
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Run on GalaxyMaking sense of a newly assembled genome
Associated Tutorial
This workflows is part of the tutorial Making sense of a newly assembled genome, available in the GTN
Thanks to...
Tutorial Author(s): Anton Nekrutenko, Delphine Lariviere, Helena Rasche
Steps
| ID | Name | Description |
|---|---|---|
| 10 | Collapse Collection | toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.0 |
| 11 | Text transformation | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1 |
| 12 | Add column | toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.0 |
| 13 | LASTZ | toolshed.g2.bx.psu.edu/repos/devteam/lastz/lastz_wrapper_2/1.3.2 |
| 14 | random_lines1 | random_lines1 |
| 15 | Filter | Filter1 |
| 16 | Search in textfiles | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/1.1.1 |
| 17 | Concatenate datasets | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.0 |
| 18 | Cut | Cut1 |
| 19 | Text transformation | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1 |
| 20 | Datamash | toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0 |
| 21 | Compute sequence length | toolshed.g2.bx.psu.edu/repos/devteam/fasta_compute_length/fasta_compute_length/1.0.1 |
| 22 | Collapse Collection | toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.0 |
| 23 | Merge Columns | toolshed.g2.bx.psu.edu/repos/devteam/merge_cols/mergeCols1/1.0.1 |
| 24 | Select | Grep1 |
| 25 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 |
| 26 | Collapse Collection | toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.0 |
| 27 | Cut | Cut1 |
| 28 | Cut | Cut1 |
| 29 | Concatenate datasets | cat1 |
| 30 | SortBED | toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_sortbed/2.27.0.0 |
| 31 | ComplementBed | toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_complementbed/2.27.0.0 |
| 32 | Filter | Filter1 |
| 33 | Filter | Filter1 |
| 34 | Intersect intervals | toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/2.27.0.2 |
| 35 | Join two Datasets | join1 |
| 5 | Filter sequences by length | toolshed.g2.bx.psu.edu/repos/devteam/fasta_filter_by_length/fasta_filter_by_length/1.1 |
| 6 | LASTZ | toolshed.g2.bx.psu.edu/repos/devteam/lastz/lastz_wrapper_2/1.3.2 |
| 7 | Collapse Collection | toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.0 |
| 8 | Select | Grep1 |
| 9 | Text transformation | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1 |
Version History
master
Creators and Submitter
Views: 1141 Downloads: 175 Runs: 4
Created: 2nd Jun 2025 at 11:02
AttributionsNone
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