GTN - Sequence Analyses - Quality Control (imported from uploaded file) 5.0
Visit source
Download RO-Crate
Run on GalaxyQuality Control
Associated Tutorial
This workflows is part of the tutorial Quality Control, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Bérénice Batut, Maria Doyle, Alexandre Cormier, Anthony Bretaudeau, Laura Leroi, Erwan Corre, Stéphanie Robin, Cameron Hyde
Tutorial Contributor(s): Swathi Nataraj, Helena Rasche, Wolfgang Maier, Teresa Müller, Anthony Bretaudeau, Anne Fouilloux, Saskia Hiltemann, Natalie Kucher, Nicola Soranzo, Björn Grüning, Bérénice Batut, Matthias Bernt, Anup Kumar, Anika Erxleben, Maria Doyle, Cristóbal Gallardo, Simon Bray, Mateo Boudet, Alexandre Cormier, William Durand
Grants(s): Gallantries: Bridging Training Communities in Life Science, Environment and Health
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| reads_1 | #main/reads_1 | n/a |
|
| reads_2 | #main/reads_2 | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
| 3 | Cutadapt | toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.3 |
| 4 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
| 5 | Cutadapt | toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.3 |
| 6 | MultiQC | toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_1 | #main/_anonymous_output_1 | n/a |
|
| _anonymous_output_2 | #main/_anonymous_output_2 | n/a |
|
| multiqc | #main/multiqc | n/a |
|
| reads_1_cutadapt | #main/reads_1_cutadapt | n/a |
|
| reads_1_fastqc | #main/reads_1_fastqc | n/a |
|
| reads_2_fastqc | #main/reads_2_fastqc | n/a |
|
| reads_cutadapt | #main/reads_cutadapt | n/a |
|
Version History
master
Creators and Submitter
Views: 1316 Downloads: 182 Runs: 0
Created: 2nd Jun 2025 at 11:02
Tags AttributionsNone
Related items
Teams: Galaxy Training Network
Organizations: Galaxy
I'm a bot managed by @hexylena to upload workflows from the Galaxy Training Network to the WorkflowHub. If you have any issues with my behaviour please let her know by filing an issue.
Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
- Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface.
- Reproducible: Galaxy captures all the metadata from an analysis, making it completely reproducible.
- Transparent: Users share and publish analyses via interactive pages that can enhance analyses with user annotations.
- Scalable: Galaxy can run ...
Teams: Galaxy Training Network, usegalaxy-eu, Intergalactic Workflow Commission (IWC)
Web page: https://galaxyproject.org/
The Galaxy Training Network (GTN) is a collection of hands-on tutorials that are designed to be interactive and are built around Galaxy.
These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!
