GTN - Sequence Analyses - Quality Control (imported from uploaded file) 5.0
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Associated Tutorial
This workflows is part of the tutorial Quality Control, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Bérénice Batut, Maria Doyle, Alexandre Cormier, Anthony Bretaudeau, Laura Leroi, Erwan Corre, Stéphanie Robin, Cameron Hyde
Tutorial Contributor(s): Swathi Nataraj, Helena Rasche, Wolfgang Maier, Teresa Müller, Anthony Bretaudeau, Anne Fouilloux, Saskia Hiltemann, Natalie Kucher, Nicola Soranzo, Björn Grüning, Bérénice Batut, Matthias Bernt, Anup Kumar, Anika Erxleben, Maria Doyle, Cristóbal Gallardo, Simon Bray, Mateo Boudet, Alexandre Cormier, William Durand
Grants(s): Gallantries: Bridging Training Communities in Life Science, Environment and Health
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| reads_1 | #main/reads_1 | n/a |
|
| reads_2 | #main/reads_2 | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
| 3 | Cutadapt | toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.3 |
| 4 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
| 5 | Cutadapt | toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.3 |
| 6 | MultiQC | toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_1 | #main/_anonymous_output_1 | n/a |
|
| _anonymous_output_2 | #main/_anonymous_output_2 | n/a |
|
| multiqc | #main/multiqc | n/a |
|
| reads_1_cutadapt | #main/reads_1_cutadapt | n/a |
|
| reads_1_fastqc | #main/reads_1_fastqc | n/a |
|
| reads_2_fastqc | #main/reads_2_fastqc | n/a |
|
| reads_cutadapt | #main/reads_cutadapt | n/a |
|
Version History
master
Creators and Submitter
Views: 1142 Downloads: 155 Runs: 0
Created: 2nd Jun 2025 at 11:02
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Teams: Galaxy Training Network
Organizations: Galaxy
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