Genome Assembly Quality Control 1.0
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Run on GalaxyGenome assembly quality control using PacBio data and with reference genome
Associated Tutorial
This workflows is part of the tutorial Genome Assembly Quality Control, available in the GTN
Thanks to...
Workflow Author(s): Erwan Corre, Stéphanie Robin, Anthony Bretaudeau, Alexandre Cormier, Laura Leroi
Tutorial Author(s): Anthony Bretaudeau, Alexandre Cormier, Erwan Corre, Laura Leroi, Stéphanie Robin
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| GCA_000146045.2_genomic.fna | GCA_000146045.2_genomic.fna | n/a |
|
| SRR13577847_subreads.30x.fastq.gz | SRR13577847_subreads.30x.fastq.gz | n/a |
|
| Scerevisiae-INSC1019.flye.30x.fa | Scerevisiae-INSC1019.flye.30x.fa | n/a |
|
| Scerevisiae-INSC1019.hifiasm.30x.fa | Scerevisiae-INSC1019.hifiasm.30x.fa | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 4 | Busco | toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0 |
| 5 | Busco | toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0 |
| 6 | Quast | toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy0 |
| 7 | Busco | toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0 |
| 8 | Chromeister | toolshed.g2.bx.psu.edu/repos/iuc/chromeister/chromeister/1.5.a+galaxy1 |
| 9 | Meryl | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
| 10 | Merqury | toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2 |
| 11 | Merqury | toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2 |
| 12 | Merqury | toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2 |
Version History
master
Creators and Submitter
Views: 1147 Downloads: 160 Runs: 4
Created: 2nd Jun 2025 at 11:02
AttributionsNone
Related items
Teams: Galaxy Training Network
Organizations: Galaxy
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