Ref Based Rad Seq 3.0
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Run on GalaxyRAD-Seq Reference-based data analysis
Associated Tutorial
This workflows is part of the tutorial RAD-Seq Reference-based data analysis, available in the GTN
Thanks to...
Tutorial Author(s): Yvan Le Bras
Tutorial Contributor(s): Verena Moosmann, Helena Rasche, Saskia Hiltemann, Nicola Soranzo, Yvan Le Bras, Bérénice Batut, Björn Grüning, William Durand, Niall Beard, Wolfgang Maier
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Barcodes_SRR034310.tabular | Barcodes_SRR034310.tabular | n/a |
|
| Population_map.txt | Population_map.txt | n/a |
|
| SRR034310.fastq | SRR034310.fastq | n/a |
|
| ref_genome_chromFa.tar | ref_genome_chromFa.tar | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 4 | Stacks: process radtags | toolshed.g2.bx.psu.edu/repos/iuc/stacks_procrad/stacks_procrad/1.46.0 |
| 5 | Stacks: process radtags | toolshed.g2.bx.psu.edu/repos/iuc/stacks_procrad/stacks_procrad/1.46.0 |
| 6 | Stacks: process radtags | toolshed.g2.bx.psu.edu/repos/iuc/stacks_procrad/stacks_procrad/1.46.0 |
| 7 | Map with BWA for Illumina | toolshed.g2.bx.psu.edu/repos/devteam/bwa_wrappers/bwa_wrapper/1.2.3 |
| 8 | Stacks: reference map | toolshed.g2.bx.psu.edu/repos/iuc/stacks_refmap/stacks_refmap/1.46.0 |
| 9 | Stacks: populations | toolshed.g2.bx.psu.edu/repos/iuc/stacks_populations/stacks_populations/1.46.0 |
Version History
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Views: 1134 Downloads: 162 Runs: 0
Created: 2nd Jun 2025 at 11:03
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