Du Novo GTN Tutorial - Make Consensus Sequences 3.0
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Run on GalaxyRun this on raw duplex sequencing reads to produce duplex consensus sequences.
Associated Tutorial
This workflows is part of the tutorial Calling very rare variants, available in the GTN
Thanks to...
Tutorial Author(s): Anton Nekrutenko, Nick Stoler
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| SRR1799908_forward | SRR1799908_forward | n/a |
|
| SRR1799908_reverse | SRR1799908_reverse | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | Du Novo: Make families | toolshed.g2.bx.psu.edu/repos/nick/dunovo/make_families/2.15 |
| 3 | Du Novo: Correct barcodes | toolshed.g2.bx.psu.edu/repos/nick/dunovo/correct_barcodes/2.15 |
| 4 | Du Novo: Align families | toolshed.g2.bx.psu.edu/repos/nick/dunovo/align_families/2.15 |
| 5 | Du Novo: Make consensus reads | toolshed.g2.bx.psu.edu/repos/nick/dunovo/dunovo/2.15 |
| 6 | DCS: Sequence Content Trimmer | toolshed.g2.bx.psu.edu/repos/nick/sequence_content_trimmer/sequence_content_trimmer/0.1 |
| 7 | SSCS: Sequence Content Trimmer | toolshed.g2.bx.psu.edu/repos/nick/sequence_content_trimmer/sequence_content_trimmer/0.1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_3 | _anonymous_output_3 | n/a |
|
| _anonymous_output_4 | _anonymous_output_4 | n/a |
|
| _anonymous_output_5 | _anonymous_output_5 | n/a |
|
| n/a | n/a | n/a |
|
Version History
master
Creators and Submitter
Views: 1146 Downloads: 172 Runs: 0
Created: 2nd Jun 2025 at 11:03
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