Workflow Type: Galaxy
Run this on raw duplex sequencing reads to produce duplex consensus sequences.
Associated Tutorial
This workflows is part of the tutorial Calling very rare variants, available in the GTN
Thanks to...
Tutorial Author(s): Anton Nekrutenko, Nick Stoler
Inputs
ID | Name | Description | Type |
---|---|---|---|
SRR1799908_forward | SRR1799908_forward | n/a |
|
SRR1799908_reverse | SRR1799908_reverse | n/a |
|
Steps
ID | Name | Description |
---|---|---|
2 | Du Novo: Make families | toolshed.g2.bx.psu.edu/repos/nick/dunovo/make_families/2.15 |
3 | Du Novo: Correct barcodes | toolshed.g2.bx.psu.edu/repos/nick/dunovo/correct_barcodes/2.15 |
4 | Du Novo: Align families | toolshed.g2.bx.psu.edu/repos/nick/dunovo/align_families/2.15 |
5 | Du Novo: Make consensus reads | toolshed.g2.bx.psu.edu/repos/nick/dunovo/dunovo/2.15 |
6 | DCS: Sequence Content Trimmer | toolshed.g2.bx.psu.edu/repos/nick/sequence_content_trimmer/sequence_content_trimmer/0.1 |
7 | SSCS: Sequence Content Trimmer | toolshed.g2.bx.psu.edu/repos/nick/sequence_content_trimmer/sequence_content_trimmer/0.1 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
_anonymous_output_3 | _anonymous_output_3 | n/a |
|
_anonymous_output_4 | _anonymous_output_4 | n/a |
|
_anonymous_output_5 | _anonymous_output_5 | n/a |
|
n/a | n/a | n/a |
|
Version History

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Views: 47 Downloads: 4 Runs: 0
Created: 2nd Jun 2025 at 11:03


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