QC report 2.0
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Run on Galaxyrna-seq-reads-to-counts
Associated Tutorial
This workflows is part of the tutorial 1: RNA-Seq reads to counts, available in the GTN
Thanks to...
Tutorial Author(s): Maria Doyle, Belinda Phipson, Harriet Dashnow
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| BAM files | #main/BAM files | n/a |
|
| Reference genes | #main/Reference genes | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | Infer Experiment | toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_infer_experiment/2.6.4.1 |
| 3 | MarkDuplicates | toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.1 |
| 4 | Samtools idxstats | toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats/samtools_idxstats/2.0.2 |
| 5 | MultiQC | toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.7 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_3 | #main/_anonymous_output_3 | n/a |
|
| _anonymous_output_4 | #main/_anonymous_output_4 | n/a |
|
Version History
master
Creators and Submitter
Views: 260 Downloads: 35 Runs: 0
Created: 2nd Jun 2025 at 11:04
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Teams: Galaxy Training Network
Organizations: Galaxy
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Teams: Galaxy Training Network
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The Galaxy Training Network (GTN) is a collection of hands-on tutorials that are designed to be interactive and are built around Galaxy.
These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!
