Compute and analyze biodiversity metrics with PAMPA toolsuite 1.0
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Associated Tutorial
This workflows is part of the tutorial Compute and analyze biodiversity metrics with PAMPA toolsuite, available in the GTN
Thanks to...
Tutorial Author(s): Coline Royaux, Yvan Le Bras, Dominique Pelletier, Jean-Baptiste Mihoub
Tutorial Contributor(s): Helena Rasche, Yvan Le Bras, Saskia Hiltemann, Coline Royaux, Björn Grüning
Funder(s): Pôle National de Données de Biodiversité
Grants(s): Gallantries: Bridging Training Communities in Life Science, Environment and Health
Steps
| ID | Name | Description |
|---|---|---|
| 3 | Column Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.1 |
| 4 | Column Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.1 |
| 5 | Concatenate datasets | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.0 |
| 6 | Column Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.1 |
| 7 | Merge Columns | toolshed.g2.bx.psu.edu/repos/devteam/merge_cols/mergeCols1/1.0.2 |
| 8 | Merge Columns | toolshed.g2.bx.psu.edu/repos/devteam/merge_cols/mergeCols1/1.0.2 |
| 9 | Count | Count1 |
| 10 | Filter | Filter1 |
| 11 | Merge Columns | toolshed.g2.bx.psu.edu/repos/devteam/merge_cols/mergeCols1/1.0.2 |
| 12 | Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regex1/1.0.0 |
| 13 | Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regex1/1.0.0 |
| 14 | Column Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.1 |
| 15 | Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regex1/1.0.0 |
| 16 | Calculate presence absence table | toolshed.g2.bx.psu.edu/repos/ecology/pampa_presabs/pampa_presabs/0.0.2 |
| 17 | Calculate presence absence table | toolshed.g2.bx.psu.edu/repos/ecology/pampa_presabs/pampa_presabs/0.0.2 |
| 18 | Merge Columns | toolshed.g2.bx.psu.edu/repos/devteam/merge_cols/mergeCols1/1.0.2 |
| 19 | Calculate presence absence table | toolshed.g2.bx.psu.edu/repos/ecology/pampa_presabs/pampa_presabs/0.0.2 |
| 20 | Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regex1/1.0.0 |
| 21 | Calculate community metrics | toolshed.g2.bx.psu.edu/repos/ecology/pampa_communitymetrics/pampa_communitymetrics/0.0.2 |
| 22 | Column Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.0 |
| 23 | Merge Columns | toolshed.g2.bx.psu.edu/repos/devteam/merge_cols/mergeCols1/1.0.2 |
| 24 | Column Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.1 |
| 25 | Advanced Cut | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0 |
| 26 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 |
| 27 | Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regex1/1.0.0 |
| 28 | Compute GLM on community data | toolshed.g2.bx.psu.edu/repos/ecology/pampa_glmcomm/pampa_glmcomm/0.0.2 |
| 29 | Compute GLM on population data | toolshed.g2.bx.psu.edu/repos/ecology/pampa_glmsp/pampa_glmsp/0.0.2 |
| 30 | Compute GLM on population data | toolshed.g2.bx.psu.edu/repos/ecology/pampa_glmsp/pampa_glmsp/0.0.2 |
| 31 | Compute GLM on population data | toolshed.g2.bx.psu.edu/repos/ecology/pampa_glmsp/pampa_glmsp/0.0.2 |
| 32 | Transpose | toolshed.g2.bx.psu.edu/repos/iuc/datamash_transpose/datamash_transpose/1.1.0 |
| 33 | Create a plot from GLM data | toolshed.g2.bx.psu.edu/repos/ecology/pampa_plotglm/pampa_plotglm/0.0.2 |
| 34 | Transpose | toolshed.g2.bx.psu.edu/repos/iuc/datamash_transpose/datamash_transpose/1.1.0 |
| 35 | Create a plot from GLM data | toolshed.g2.bx.psu.edu/repos/ecology/pampa_plotglm/pampa_plotglm/0.0.2 |
| 36 | Transpose | toolshed.g2.bx.psu.edu/repos/iuc/datamash_transpose/datamash_transpose/1.1.0 |
| 37 | Create a plot from GLM data | toolshed.g2.bx.psu.edu/repos/ecology/pampa_plotglm/pampa_plotglm/0.0.2 |
| 38 | Transpose | toolshed.g2.bx.psu.edu/repos/iuc/datamash_transpose/datamash_transpose/1.1.0 |
| 39 | Create a plot from GLM data | toolshed.g2.bx.psu.edu/repos/ecology/pampa_plotglm/pampa_plotglm/0.0.2 |
Version History
master
Creators and Submitter
Views: 1100 Downloads: 165 Runs: 0
Created: 2nd Jun 2025 at 11:04
AttributionsNone
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