RNA Seq Genes To Pathways (imported from uploaded file) 5.0
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Run on GalaxyRNA-seq genes to pathways
Associated Tutorial
This workflows is part of the tutorial 3: RNA-seq genes to pathways, available in the GTN
Thanks to...
Tutorial Author(s): Maria Doyle, Belinda Phipson
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| DE table | #main/DE table | n/a |
|
| factordata | #main/factordata | n/a |
|
| limma_filtered_counts | #main/limma_filtered_counts | n/a |
|
| mouse_hallmark_sets | #main/mouse_hallmark_sets | n/a |
|
| seqdata | #main/seqdata | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 5 | Compute | toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.6 |
| 6 | Cut | Cut1 |
| 7 | Advanced Cut | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0 |
| 8 | Advanced Cut | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0 |
| 9 | Join two Datasets | join1 |
| 10 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 |
| 11 | EGSEA | toolshed.g2.bx.psu.edu/repos/iuc/egsea/egsea/1.20.0 |
| 12 | Cut | Cut1 |
| 13 | Cut | Cut1 |
| 14 | fgsea | toolshed.g2.bx.psu.edu/repos/iuc/fgsea/fgsea/1.8.0+galaxy1 |
| 15 | goseq | toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.44.0+galaxy0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_1 | #main/_anonymous_output_1 | n/a |
|
| _anonymous_output_10 | #main/_anonymous_output_10 | n/a |
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| _anonymous_output_11 | #main/_anonymous_output_11 | n/a |
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| _anonymous_output_12 | #main/_anonymous_output_12 | n/a |
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| _anonymous_output_13 | #main/_anonymous_output_13 | n/a |
|
| _anonymous_output_14 | #main/_anonymous_output_14 | n/a |
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| _anonymous_output_2 | #main/_anonymous_output_2 | n/a |
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| _anonymous_output_3 | #main/_anonymous_output_3 | n/a |
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| _anonymous_output_4 | #main/_anonymous_output_4 | n/a |
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| _anonymous_output_5 | #main/_anonymous_output_5 | n/a |
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| _anonymous_output_6 | #main/_anonymous_output_6 | n/a |
|
| _anonymous_output_7 | #main/_anonymous_output_7 | n/a |
|
| _anonymous_output_8 | #main/_anonymous_output_8 | n/a |
|
| _anonymous_output_9 | #main/_anonymous_output_9 | n/a |
|
Version History
master
Creators and Submitter
Views: 1134 Downloads: 157 Runs: 0
Created: 2nd Jun 2025 at 11:04
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Teams: Galaxy Training Network
Organizations: Galaxy
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