Workflow Type: Galaxy
Associated Tutorial
This workflows is part of the tutorial RNA-Seq data analysis, clustering and visualisation tutorial, available in the GTN
Thanks to...
Tutorial Author(s): Peter-Bram 't Hoen, Casper de Visser, Charlotte Adang
Tutorial Contributor(s): Saskia Hiltemann
Steps
ID | Name | Description |
---|---|---|
36 | DESeq2 | toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.8+galaxy0 |
37 | DESeq2 | toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.8+galaxy0 |
38 | Gene length and GC content | toolshed.g2.bx.psu.edu/repos/iuc/length_and_gc_content/length_and_gc_content/0.1.2 |
39 | Filter | Filter1 |
40 | Table Compute | toolshed.g2.bx.psu.edu/repos/iuc/table_compute/table_compute/1.2.4+galaxy1 |
41 | Table Compute | toolshed.g2.bx.psu.edu/repos/iuc/table_compute/table_compute/1.2.4+galaxy1 |
42 | Volcano Plot | toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/3.3.3+galaxy0 |
43 | Join | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.5+galaxy0 |
44 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/9.5+galaxy0 |
45 | Join | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.5+galaxy0 |
46 | Compute | toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1 |
47 | Annotate DESeq2/DEXSeq output tables | toolshed.g2.bx.psu.edu/repos/iuc/deg_annotate/deg_annotate/1.1.0 |
48 | Join | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.5+galaxy0 |
49 | Cut | Cut1 |
50 | Cut | Cut1 |
51 | Concatenate datasets | cat1 |
52 | Compute | toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1 |
53 | goseq | toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.50.0+galaxy0 |
54 | goseq | toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.50.0+galaxy0 |
55 | Volcano Plot | toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/3.3.3+galaxy0 |
56 | Cut | Cut1 |
57 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/9.5+galaxy0 |
58 | Select first | Show beginning1 |
59 | Cut | Cut1 |
60 | Cut | Cut1 |
61 | heatmap2 | toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/3.2.0+galaxy1 |
62 | heatmap2 | toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/3.2.0+galaxy1 |
63 | heatmap2 | toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/3.2.0+galaxy1 |
64 | Multivariate | toolshed.g2.bx.psu.edu/repos/ethevenot/multivariate/Multivariate/2.3.10 |
65 | Multivariate | toolshed.g2.bx.psu.edu/repos/ethevenot/multivariate/Multivariate/2.3.10 |
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Created: 2nd Jun 2025 at 11:05

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