Workflow constructed from history 'Computer assignment RNA seq analysis and visualisation -BMW2 - attempt 3'
1.0

Workflow Type: Galaxy

Associated Tutorial

This workflows is part of the tutorial RNA-Seq data analysis, clustering and visualisation tutorial, available in the GTN

Thanks to...

Tutorial Author(s): Peter-Bram 't Hoen, Casper de Visser, Charlotte Adang

Tutorial Contributor(s): Saskia Hiltemann

gtn star logo followed by the word workflows

Steps

ID Name Description
36 DESeq2 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.8+galaxy0
37 DESeq2 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.8+galaxy0
38 Gene length and GC content toolshed.g2.bx.psu.edu/repos/iuc/length_and_gc_content/length_and_gc_content/0.1.2
39 Filter Filter1
40 Table Compute toolshed.g2.bx.psu.edu/repos/iuc/table_compute/table_compute/1.2.4+galaxy1
41 Table Compute toolshed.g2.bx.psu.edu/repos/iuc/table_compute/table_compute/1.2.4+galaxy1
42 Volcano Plot toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/3.3.3+galaxy0
43 Join toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.5+galaxy0
44 Sort toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/9.5+galaxy0
45 Join toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.5+galaxy0
46 Compute toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1
47 Annotate DESeq2/DEXSeq output tables toolshed.g2.bx.psu.edu/repos/iuc/deg_annotate/deg_annotate/1.1.0
48 Join toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.5+galaxy0
49 Cut Cut1
50 Cut Cut1
51 Concatenate datasets cat1
52 Compute toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1
53 goseq toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.50.0+galaxy0
54 goseq toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.50.0+galaxy0
55 Volcano Plot toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/3.3.3+galaxy0
56 Cut Cut1
57 Sort toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/9.5+galaxy0
58 Select first Show beginning1
59 Cut Cut1
60 Cut Cut1
61 heatmap2 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/3.2.0+galaxy1
62 heatmap2 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/3.2.0+galaxy1
63 heatmap2 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/3.2.0+galaxy1
64 Multivariate toolshed.g2.bx.psu.edu/repos/ethevenot/multivariate/Multivariate/2.3.10
65 Multivariate toolshed.g2.bx.psu.edu/repos/ethevenot/multivariate/Multivariate/2.3.10

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1.0 (earliest) Created 2nd Jun 2025 at 11:05 by GTN Bot

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Created: 2nd Jun 2025 at 11:05

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