Workflow constructed from history 'Computer assignment RNA seq analysis and visualisation -BMW2 - attempt 3' 1.0
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This workflows is part of the tutorial RNA-Seq data analysis, clustering and visualisation tutorial, available in the GTN
Thanks to...
Tutorial Author(s): Peter-Bram 't Hoen, Casper de Visser, Charlotte Adang
Tutorial Contributor(s): Saskia Hiltemann
Steps
| ID | Name | Description |
|---|---|---|
| 36 | DESeq2 | toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.8+galaxy0 |
| 37 | DESeq2 | toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.8+galaxy0 |
| 38 | Gene length and GC content | toolshed.g2.bx.psu.edu/repos/iuc/length_and_gc_content/length_and_gc_content/0.1.2 |
| 39 | Filter | Filter1 |
| 40 | Table Compute | toolshed.g2.bx.psu.edu/repos/iuc/table_compute/table_compute/1.2.4+galaxy1 |
| 41 | Table Compute | toolshed.g2.bx.psu.edu/repos/iuc/table_compute/table_compute/1.2.4+galaxy1 |
| 42 | Volcano Plot | toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/3.3.3+galaxy0 |
| 43 | Join | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.5+galaxy0 |
| 44 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/9.5+galaxy0 |
| 45 | Join | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.5+galaxy0 |
| 46 | Compute | toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1 |
| 47 | Annotate DESeq2/DEXSeq output tables | toolshed.g2.bx.psu.edu/repos/iuc/deg_annotate/deg_annotate/1.1.0 |
| 48 | Join | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.5+galaxy0 |
| 49 | Cut | Cut1 |
| 50 | Cut | Cut1 |
| 51 | Concatenate datasets | cat1 |
| 52 | Compute | toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1 |
| 53 | goseq | toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.50.0+galaxy0 |
| 54 | goseq | toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.50.0+galaxy0 |
| 55 | Volcano Plot | toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/3.3.3+galaxy0 |
| 56 | Cut | Cut1 |
| 57 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/9.5+galaxy0 |
| 58 | Select first | Show beginning1 |
| 59 | Cut | Cut1 |
| 60 | Cut | Cut1 |
| 61 | heatmap2 | toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/3.2.0+galaxy1 |
| 62 | heatmap2 | toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/3.2.0+galaxy1 |
| 63 | heatmap2 | toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/3.2.0+galaxy1 |
| 64 | Multivariate | toolshed.g2.bx.psu.edu/repos/ethevenot/multivariate/Multivariate/2.3.10 |
| 65 | Multivariate | toolshed.g2.bx.psu.edu/repos/ethevenot/multivariate/Multivariate/2.3.10 |
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Views: 1372 Downloads: 183 Runs: 0
Created: 2nd Jun 2025 at 11:05
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