Visualization Of RNA-Seq Results With Volcano Plot 1.0
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Associated Tutorial
This workflows is part of the tutorial Visualization of RNA-Seq results with Volcano Plot, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Maria Doyle, Armin Dadras, Helena Rasche
Tutorial Author(s): Maria Doyle
Tutorial Contributor(s): Armin Dadras, Teresa Müller, Björn Grüning, Nicola Soranzo, Helena Rasche, Saskia Hiltemann
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| DE results | #main/DE results | Differentially expressed results file (genes in rows, and 4 required columns: raw P values, adjusted P values (FDR), log fold change and gene labels) |
|
| Volcano genes | #main/Volcano genes | Genes of interest file (list of genes to be plotted in volcano) |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | Volcano plot highlighting significant | toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.7 |
| 3 | Volcano plot labelling top 10 | toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.7 |
| 4 | Volcano plot labelling genes of interest | toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.7 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| volcano_pdf | #main/volcano_pdf | n/a |
|
Version History
master
Creators and Submitter
Views: 1168 Downloads: 168 Runs: 0
Created: 2nd Jun 2025 at 11:05
AttributionsNone
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Organizations: Galaxy
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