Heatmap2 Workflow 4.0
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Run on GalaxyVisualization of RNA-Seq results with heatmap2
Associated Tutorial
This workflows is part of the tutorial Visualization of RNA-Seq results with heatmap2, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Maria Doyle
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| heatmap_genes | heatmap_genes | n/a |
|
| normalized_counts | normalized_counts | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | Join two Datasets | join1 |
| 3 | Cut | Cut1 |
| 4 | Transpose | toolshed.g2.bx.psu.edu/repos/iuc/datamash_transpose/datamash_transpose/1.1.0 |
| 5 | heatmap2 | toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/2.2.1+galaxy1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| heatmap_pdf | heatmap_pdf | n/a |
|
Version History
master
Creators and Submitter
Views: 1221 Downloads: 157 Runs: 0
Created: 2nd Jun 2025 at 11:06
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Teams: Galaxy Training Network
Organizations: Galaxy
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Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
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The Galaxy Training Network (GTN) is a collection of hands-on tutorials that are designed to be interactive and are built around Galaxy.
These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!
