Image Learner - GTEx Tissue Modeling 1.0
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Run on Galaxy Train an Image Learner tissue classifier from prepared GTEx v11 expression images and metadata.
Associated Tutorial
This workflows is part of the tutorial GTEx Tissue Modeling with Galaxy Image Learner, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Paulo Cilas Morais Lyra Junior, Jeremy Goecks
Tutorial Author(s): Paulo Cilas Morais Lyra Junior, Allissa Dillman, Natalie Kucher, Alyssa Pybus, Junhao Qiu, Jeremy Goecks
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| selected_gtex_v11_tpm_image_tissue_dataset.zip | #main/selected_gtex_v11_tpm_image_tissue_dataset.zip | ZIP archive containing one grayscale expression image per selected GTEx sample. |
|
| selected_gtex_v11_tpm_image_tissue_labels.csv | #main/selected_gtex_v11_tpm_image_tissue_labels.csv | Prepared metadata CSV with image_path and label columns. The label column is derived from SMTSD in GTEx_Analysis_v11_Annotations_SampleAttributesDS.txt. |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | Image Learner | Image Learner tissue classification using the metadata table's `image_path` column as the image file and `label` column derived from GTEx `SMTSD` labels. toolshed.g2.bx.psu.edu/repos/goeckslab/image_learner/image_learner/0.1.5 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| model | #main/model | n/a |
|
| predictions | #main/predictions | n/a |
|
| report | #main/report | n/a |
|
Version History
master
Creators and Submitter
Views: 4 Downloads: 0 Runs: 0
Created: 27th Jul 2026 at 14:51
AttributionsNone
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Teams: Galaxy Training Network
Organizations: Galaxy
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