Workflow Type: Galaxy
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Performs scaffolding using Bionano Data. Part of VGP assembly pipeline.
Could not render the workflow diagram.
Inputs
ID | Name | Description | Type |
---|---|---|---|
Bionano Data | n/a | Bionano data in Cmap format. |
|
Conflict resolution files | n/a | Input a conflict resolution file indicating which NGS and BioNano conflicting contigs to be cut [optional] (-M) |
|
Estimated genome size - Parameter File | n/a | Parameter file generated in the VGP Hifiasm workflow. Estimated reference genome size (in bp) for computing NGx statistics |
|
Hifiasm Purged Assembly | n/a | The assembly from "VGP-Hifiasm" workflow. |
|
Pacbio trimmed reads | n/a | n/a |
|
Steps
ID | Name | Description |
---|---|---|
10_Quast | n/a | n/a |
3_Input parameter | n/a | n/a |
6_Parse parameter value | n/a | n/a |
7_Bionano Hybrid Scaffold | n/a | n/a |
8_Concatenate datasets | n/a | n/a |
9_Busco | n/a | n/a |
Version History
Version 1 (earliest) Created 5th Apr 2022 at 23:21 by Cristóbal Gallardo
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Created: 5th Apr 2022 at 23:21
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