Genome assessment post assembly
General usage recommendations
Please see the Genome assessment post assembly guide.
See change log
Attributions
The workflow & the doc_guidelines template used are supported by the Australian BioCommons via Bioplatforms Australia funding, the Australian Research Data Commons (https://doi.org/10.47486/PL105) and the Queensland Government RICF programme. Bioplatforms Australia and the Australian Research Data Commons are enabled by the National Collaborative Research Infrastructure Strategy (NCRIS).
Inputs
ID | Name | Description | Type |
---|---|---|---|
FASTA contigs - Primary Assembly | FASTA contigs - Primary Assembly | n/a |
|
Steps
ID | Name | Description |
---|---|---|
1 | Fasta Statistics | toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0 |
2 | Quast | toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2+galaxy1 |
3 | Meryl | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy3 |
4 | Busco | toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.2.2+galaxy0 |
5 | Merqury | toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
Fasta Statistics on input dataset(s): summary stats | Fasta Statistics on input dataset(s): summary stats | n/a |
|
Quast on input dataset(s): PDF report | Quast on input dataset(s): PDF report | n/a |
|
Quast on input dataset(s): Log | Quast on input dataset(s): Log | n/a |
|
Quast on input dataset(s): tabular report | Quast on input dataset(s): tabular report | n/a |
|
Quast on input dataset(s): HTML report | Quast on input dataset(s): HTML report | n/a |
|
Meryl on input dataset(s): read-db.meryldb | Meryl on input dataset(s): read-db.meryldb | n/a |
|
Busco on input dataset(s): full table | Busco on input dataset(s): full table | n/a |
|
Merqury on input dataset(s): size files | Merqury on input dataset(s): size files | n/a |
|
Merqury on input dataset(s): stats | Merqury on input dataset(s): stats | n/a |
|
Merqury on input dataset(s): bed | Merqury on input dataset(s): bed | n/a |
|
Merqury on input dataset(s): wig | Merqury on input dataset(s): wig | n/a |
|
Merqury on input dataset(s): qv | Merqury on input dataset(s): qv | n/a |
|
Merqury on input dataset(s): png | Merqury on input dataset(s): png | n/a |
|
Version History
v2.0.5 (latest) Created 6th Aug 2024 at 11:04 by Anna Syme
Merge pull request #7 from AustralianBioCommons/supernord-workflow-name-fix
Update workflow name in ro-crate-metadata.json
Frozen
v2.0.5
fe2213b
v2.0.2 Created 16th Apr 2024 at 08:19 by Johan Gustafsson
Update .lifemonitor.yaml
Frozen
v2.0.2
4ad99a2
v1.1.0 Created 9th May 2023 at 01:59 by Johan Gustafsson
Add missing raw data input
Frozen
v1.1.0
46d8253
v1.0.0 (earliest) Created 7th Nov 2022 at 07:10 by Johan Gustafsson
Update links
Frozen
v1.0.0
efaf002
Creators
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Views: 5370 Downloads: 648 Runs: 6
Created: 7th Nov 2022 at 07:10
Last updated: 6th Aug 2024 at 11:04
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