nf-core/rnaseq
3.9

3.26.0 (latest)

3.25.0

3.24.0

3.23.0

3.22.2

3.22.1

3.22.0

3.21.0

3.20.0

3.19.0

3.18.0

3.17.0

3.16.1

3.16.0

3.15.1

3.15.0

3.14.0

3.13.2

3.13.0

3.13.1

3.12.0

3.11.2

3.11.1

3.11.0

3.10.1

3.10

3.9

3.8.1

3.8

3.7

3.6

3.5

3.4

3.3

3.2

3.1

3.0

2.0

1.4.2

1.4.1

1.4

1.3

1.2

1.1

1.0 (earliest)

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Workflow Type: Nextflow

Stable

RNA sequencing analysis pipeline for gene/isoform quantification and extensive quality control.

SEEK ID: https://workflowhub.eu/workflows/44?version=19

Version History

3.26.0 (latest) Created 28th Jun 2026 at 03:09 by WorkflowHub Bot

Updated to 3.26.0

Frozen 3.26.0 e7ca462

3.25.0 Created 28th Jun 2026 at 03:09 by WorkflowHub Bot

Updated to 3.25.0

Frozen 3.25.0 891468c

3.24.0 Created 28th Jun 2026 at 03:09 by WorkflowHub Bot

Updated to 3.24.0

Frozen 3.24.0 47b3b0d

3.23.0 Created 28th Jun 2026 at 03:09 by WorkflowHub Bot

Updated to 3.23.0

Frozen 3.23.0 13328f7

3.22.2 Created 28th Jun 2026 at 03:09 by WorkflowHub Bot

Updated to 3.22.2

Frozen 3.22.2 3816d48

3.22.1 Created 28th Jun 2026 at 03:09 by WorkflowHub Bot

Updated to 3.22.1

Frozen 3.22.1 759dbf1

3.22.0 Created 28th Jun 2026 at 03:09 by WorkflowHub Bot

Updated to 3.22.0

Frozen 3.22.0 c522f87

3.21.0 Created 28th Jun 2026 at 03:09 by WorkflowHub Bot

Updated to 3.21.0

Frozen 3.21.0 9738a2d

3.20.0 Created 3rd Sep 2025 at 03:04 by WorkflowHub Bot

Updated to 3.20.0

Frozen 3.20.0 b971ba1

3.19.0 Created 11th Jun 2025 at 03:06 by WorkflowHub Bot

Updated to 3.19.0

Frozen 3.19.0 0bb032c

3.18.0 Created 21st Dec 2024 at 04:05 by WorkflowHub Bot

Updated to 3.18.0

Frozen 3.18.0 b96a753

3.17.0 Created 25th Oct 2024 at 04:03 by WorkflowHub Bot

Updated to 3.17.0

Frozen 3.17.0 00f924c

3.16.1 Created 17th Oct 2024 at 04:03 by WorkflowHub Bot

Updated to 3.16.1

Frozen 3.16.1 1f3f64d

3.16.0 Created 3rd Oct 2024 at 04:03 by WorkflowHub Bot

Updated to 3.16.0

Frozen 3.16.0 33df0c0

3.15.1 Created 17th Sep 2024 at 04:03 by WorkflowHub Bot

Updated to 3.15.1

Frozen 3.15.1 4053b2e

3.15.0 Created 6th Sep 2024 at 04:03 by WorkflowHub Bot

Updated to 3.15.0

Frozen 3.15.0 4e34945

3.14.0 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.14.0

Frozen 3.14.0 b89fac3

3.13.2 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.13.2

Frozen 3.13.2 a10f41a

3.13.0 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.13.0

Frozen 3.13.0 14f9d26

3.13.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.13.1

Frozen 3.13.1 b59e87a

3.12.0 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.12.0

Frozen 3.12.0 3bec233

3.11.2 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.11.2

Frozen 3.11.2 5671b65

3.11.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.11.1

Frozen 3.11.1 287afcf

3.11.0 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.11.0

Frozen 3.11.0 48fb9b4

3.10.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.10.1

Frozen 3.10.1 6e1e448

3.10 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.10

Frozen 3.10 adce7ce

3.9 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.9

Frozen 3.9 e049f51

3.8.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.8.1

Frozen 3.8.1 89bf536

3.8 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.8

Frozen 3.8 6995330

3.7 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.7

Frozen 3.7 e0dfce9

3.6 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.6

Frozen 3.6 7106bd7

3.5 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.5

Frozen 3.5 646723c

3.4 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.4

Frozen 3.4 964425e

3.3 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.3

Frozen 3.3 8094c42

3.2 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.2

Frozen 3.2 b3ff92b

3.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.1

Frozen 3.1 0fcbb0a

3.0 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.0

Frozen 3.0 3643a94

2.0 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 2.0

Frozen 2.0 bc5fc76

1.4.2 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 1.4.2

Frozen 1.4.2 3b6df9b

1.4.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 1.4.1

Frozen 1.4.1 f213557

1.4 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 1.4

Frozen 1.4 55eee0c

1.3 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 1.3

Frozen 1.3 37f260d

1.2 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 1.2

Frozen 1.2 e837637

1.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 1.1

Frozen 1.1 1cd5ab7

1.0 (earliest) Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 1.0

Frozen 1.0 44f1525

Creators and Submitter

Creators

Harshil Patel
Phil Ewels
Rickard Hammarén

Submitter

WorkflowHub Bot

Discussion Channels

Documentation

nf-core Slack channel

Citation

Couldn't extract the citation from the provided CFF file:

"prefered-citation" is not a permitted key.

License

MIT License (MIT)

Activity

Views: 39677 Downloads: 28886

Created: 22nd Jul 2020 at 11:58

Last updated: 28th Jun 2026 at 03:09

Annotated Properties

Scientific disciplines

Computer Science