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The containerised pipeline for profiling shotgun metagenomic data is derived from the MGnify pipeline raw-reads analyses, a well-established resource used for analyzing microbiome data. Key components:
- Quality control and decontamination
- rRNA and ncRNA detection using Rfam database
- Taxonomic classification of SSU and LSU regions
- Abundance analysis with mOTUs
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main @ 5cd3f68 (earliest) Created 30th Mar 2023 at 21:49 by Ekaterina Sakharova
add seqprep
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Created: 30th Mar 2023 at 21:49
Last updated: 4th Apr 2023 at 16:20
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