polish-with-long-reads/main
v0.1

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Workflow Type: Galaxy

Racon polish with long reads, x4

SEEK ID: https://workflowhub.eu/workflows/563?version=1

Inputs

ID	Name	Description	Type
Assembly to be polished	Assembly to be polished	n/a	File
long reads	long reads	n/a	File
minimap setting (for long reads)	minimap setting (for long reads)	n/a	string

Steps

ID	Name	Description
3	Minimap2: map long reads to assembly	Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0
4	Racon: polish 1	toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1
5	Minimap2: map long reads to polished assembly 1	Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0
6	Racon: polish 2	toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1
7	Minimap2: map long reads to polished assembly 2	Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0
8	Racon: polish 3	toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1
9	Minimap2: map long reads to polished assembly 3	Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0
10	Racon: polish 4	toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1

Outputs

ID	Name	Description	Type
Assembly polished by long reads using Racon	Assembly polished by long reads using Racon	n/a	File

Version History

v0.1 (earliest) Created 8th Sep 2023 at 03:01 by WorkflowHub Bot

Updated to v0.1

Frozen v0.1 efe3ab9

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Creators and Submitter

Creator

Anna Syme

Submitter

WorkflowHub Bot

License

Activity

Views: 2973 Downloads: 236 Runs: 0

Created: 8th Sep 2023 at 03:01

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Attributions

None

Total size: 1.06 MB

(v.1.16.0-main)

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