average-bigwig-between-replicates/main
View on GitHub
Download RO-Crate
Run on Galaxy
Workflow Type: Galaxy
Frozen
We assume the identifiers of the input list are like: sample_name_replicateID. The identifiers of the output list will be: sample_name
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Bigwig to average | #main/Bigwig to average | We assume the identifiers are like: sample_name_replicateID |
|
| bin_size | #main/bin_size | Bin size for normalized bigwig (usually 5bp is sufficient for RNA-seq and 50bp for ChIP/CUTandRUN/ATAC) |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | Apply rules | __APPLY_RULES__ |
| 3 | average bigwigs from different replicates | toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bigwig_average/deeptools_bigwig_average/3.5.2+galaxy0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| average_bigwigs | #main/average_bigwigs | n/a |
|
Version History
v0.1 (earliest) Created 27th Sep 2023 at 03:01 by WorkflowHub Bot
Updated to v0.1
Frozen
v0.14623eaa
Creators and Submitter
License
Activity
Views: 6206 Downloads: 3508 Runs: 0
Created: 27th Sep 2023 at 03:01
TagsThis item has not yet been tagged.
AttributionsNone
Related items
Advanced Spaces list for this Workflow with search and filtering
Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
- Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface.
- Reproducible: Galaxy captures all the metadata from an analysis, making it completely reproducible.
- Transparent: Users share and publish analyses via interactive pages that can enhance analyses with user annotations.
- Scalable: Galaxy can run ...
Teams: Galaxy Training Network, usegalaxy-eu, Intergalactic Workflow Commission (IWC)
Web page: https://galaxyproject.org/
Advanced Teams list for this Workflow with search and filtering
The Intergalactic Workflow Commission releases vetted analysis pipelines for the Galaxy platform.
You can contribute too!
Space: Galaxy
Public web page: https://iwc.galaxyproject.org/
