velocyto/Velocyto-on10X-from-bundled
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Workflow Type: Galaxy
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Run velocyto to get loom with counts of spliced and unspliced. It will extract the 'barcodes' from the bundled outputs.
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| BAM files with CB and UB | #main/BAM files with CB and UB | This can be output of CellRanger or STARsolo |
|
| filtered matrices in bundle | #main/filtered matrices in bundle | This can be output of STARsolo or DropletUtils |
|
| gtf file | #main/gtf file | gtf file |
|
Steps
| ID | Name | Description |
|---|---|---|
| 3 | extract barcodes from bundle | __APPLY_RULES__ |
| 4 | Velocyto_on10X_filtered_barcodes | n/a |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| velocyto loom | #main/velocyto loom | n/a |
|
Version History
v0.1 (earliest) Created 27th Jan 2024 at 03:01 by WorkflowHub Bot
Updated to v0.1
Frozen
v0.12264428
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Views: 5078 Downloads: 3240 Runs: 0
Created: 27th Jan 2024 at 03:01
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