Masking repeats with RepeatMasker Version 1
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Run on GalaxyMasking repeats in a genome using RepeatMasker
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Raw genome sequence | #main/Raw genome sequence | The raw (not masked) genome sequence in fasta format |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | Red | toolshed.g2.bx.psu.edu/repos/iuc/red/red/2018.09.10+galaxy1 |
| 2 | RepeatMasker | toolshed.g2.bx.psu.edu/repos/bgruening/repeat_masker/repeatmasker_wrapper/4.1.5+galaxy0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| RepeatMasker masked sequence on input dataset(s) | #main/RepeatMasker masked sequence on input dataset(s) | n/a |
|
| RepeatMasker output log on input dataset(s) | #main/RepeatMasker output log on input dataset(s) | n/a |
|
| RepeatMasker repeat catalogue on input dataset(s) | #main/RepeatMasker repeat catalogue on input dataset(s) | n/a |
|
| RepeatMasker repeat statistics on input dataset(s) | #main/RepeatMasker repeat statistics on input dataset(s) | n/a |
|
| _anonymous_output_1 | #main/_anonymous_output_1 | n/a |
|
| _anonymous_output_2 | #main/_anonymous_output_2 | n/a |
|
Version History
Version 1 (earliest) Created 15th Feb 2024 at 11:38 by Paul De Geest
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Created: 15th Feb 2024 at 11:38
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Teams: EuroScienceGateway, ELIXIR Belgium
Organizations: ELIXIR Belgium
https://orcid.org/0000-0002-8940-4946
ELIXIR is an intergovernmental organisation that brings together life science resources from across Europe. These resources include databases, software tools, training materials, cloud storage and supercomputers.
The goal of ELIXIR is to coordinate these resources so that they form a single infrastructure. This infrastructure makes it easier for scientists to find and share data, exchange expertise, and agree on best practices. Ultimately, it will help them gain new insights into how living ...
Teams: ELIXIR Training, FAIR Computational Workflows, EuroScienceGateway, BY-COVID (general), ELIXIR Tools platform, ELIXIR Metabolomics
Web page: https://elixir-europe.org/
EuroScienceGateway will leverage a distributed computing network across 13 European countries, accessible via 6 national, user-friendly web portals, facilitating access to compute and storage infrastructures across Europe as well as to data, tools, workflows and services that can be customized to suit researchers’ needs.EuroScienceGateway will deliver a robust, scalable, seamlessly integrated open infrastructure for data-driven research, contributing an innovative and customizable service for ...
Space: ELIXIR
Public web page: https://eurosciencegateway.eu/
Start date: 1st Oct 2022
End date: 31st Aug 2025
Abstract (Expand)
Authors: Stian Soiland-Reyes, Björn Grüning, Paul De Geest
Date Published: 29th Feb 2024
Publication Type: Tech report
Collection of workflows used or developed by the EuroScienceGateway project.
Maintainers: Stian Soiland-Reyes, Paul De Geest, Eli Chadwick, Armin Dadras
Number of items: 48
Tags: Not specified
