Collection of de-novo genome assembly workflows written for implementation in Galaxy
Input data should be PacBio HiFi reads and Illumina 3-dimensional Chromatin Confirmation Capture (HiC) reads
Executing all workflows will output two scaffolded haplotype assemblies and the complete QC analyses
Please run the workflows in order: WF0 (there are two, one for HiFi and one for Illumina HiC), WF1, WF2, WF3, WF4
Items
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ERGA DataQC Illumina v2409 (WF0)
- Added about 1 year ago -
ERGA DataQC HiFi v2409 (WF0)
- Added about 1 year ago -
ERGA Profiling HiFi v2409 (WF1)
- Added about 1 year ago -
ERGA HiFi+HiC Assembly+QC Hifiasm v2309 (WF2)
- Added about 1 year ago -
ERGA HiFi Hap1Hap2 Purge+QC v2309 (WF3)
- Added about 1 year ago -
ERGA HiC Hap1Hap2 Scaffolding+QC YaHS v2309 (WF4)
- Added about 1 year ago
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Created: 16th Jun 2023 at 15:07
Last updated: 20th Nov 2023 at 16:20
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