Workflows

What is a Workflow?
178 Workflows visible to you, out of a total of 178
taxonomy-profiling-and-visualization-with-krona/main

Microbiome - Taxonomy Profiling

Type: Galaxy

Creators: Engy Nasr, Bérénice Batut, Paul Zierep

Submitter: WorkflowHub Bot

DOI: 10.48546/workflowhub.workflow.1059.1

brew3r/main

This workflow takes a collection of BAM (output of STAR) and a gtf. It extends the input gtf using de novo annotation.

Type: Galaxy

Creator: Lucille Delisle

Submitter: WorkflowHub Bot

bacterial_genome_annotation/main

Annotation of an assembled bacterial genomes to detect genes, potential plasmids, integrons and Insertion sequence (IS) elements.

Type: Galaxy

Creators: ABRomics , Pierre Marin, Clea Siguret, abromics-consortium

Submitter: WorkflowHub Bot

amr_gene_detection/main

Antimicrobial resistance gene detection from assembled bacterial genomes

Type: Galaxy

Creators: ABRomics , Pierre Marin, Clea Siguret, abromics-consortium

Submitter: WorkflowHub Bot

nf-core/reportho

A pipeline for ortholog fetching and analysis

Type: Nextflow

Creators: itrujnara , itrujnara

Submitter: WorkflowHub Bot

nf-core/rnafusion

Nextflow rnafusion analysis pipeline, part of the nf-core community.

Type: Nextflow

Creator: Martin Proks

Submitter: WorkflowHub Bot

nf-core/crisprseq

Pipeline for the analysis of crispr data

Type: Nextflow

Creators: mirpedrol , mirpedrol , Júlia Mir Pedrol, mirpedrol , mirpedrol , Laurence Kuhlburger

Submitter: WorkflowHub Bot

nf-core/viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

Type: Nextflow

Creators: Sarai Varona and Sara Monzon, Patel H, Varona S and Monzon S

Submitter: WorkflowHub Bot

nf-core/viralintegration

Integration of viral sequences in genomic data

Type: Nextflow

Creators: Alyssa Briggs, Edmund Miller

Submitter: WorkflowHub Bot

nf-core/smrnaseq

Small RNA-Seq Best Practice Analysis Pipeline.

Type: Nextflow

Creators: Phil Ewels <phil.ewels@scilifelab.se>, P. Ewels <phil.ewels@scilifelab.se>, P. Ewels, Chuan Wang <chuan.wang@scilifelab.se>, C. Wang <chuan.wang@scilifelab.se>, C. Wang, Rickard Hammarén <rickard.hammaren@scilifelab.se>, R. Hammarén <rickard.hammaren@scilifelab.se>, R. Hammarén, Lorena Pantano <lorena.pantano@gmail.com>, L. Pantano <lorena.pantano@gmail.com>, L. Pantano

Submitter: WorkflowHub Bot

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