Pavankumar Videm
SEEK ID: https://workflowhub.eu/people/77
Locations:
Germany
, Not specified
ORCID:
https://orcid.org/0000-0002-5192-126X
Joined: 2nd Nov 2020
Expertise: Not specified
Tools: Not specified
Roles
Team Administrator
Their tagsRelated items
Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
- Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface.
- Reproducible: Galaxy captures all the metadata from an analysis, making it completely reproducible.
- Transparent: Users share and publish analyses via interactive pages that can enhance analyses with user annotations.
- Scalable: Galaxy can run ...
Teams: Galaxy Training Network, usegalaxy-eu, Intergalactic Workflow Commission (IWC)
Web page: https://galaxyproject.org/
This team and associated Galaxy workflows are maintained by the European Galaxy Team.
Space: Galaxy
Public web page: https://usegalaxy.eu
The Intergalactic Workflow Commission releases vetted analysis pipelines for the Galaxy platform.
You can contribute too!
Space: Galaxy
Public web page: https://iwc.galaxyproject.org/
Country: Not specified
City: Not specified
Web page: Not specified
This workflow can only work on an experimental setup with exactly 2 conditions. It takes two collections of count tables as input and performs differential expression analysis. Additionally it filters for DE genes based on adjusted p-value and log2 fold changes thresholds. It also generates informative plots.
RNA-RNA interactome analysis using ChiRA tools suite. The aligner used is CLAN.
DownloadRNA-RNA interactome analysis using ChiRA tools suite. The aligner used is BWA-MEM.
