Workflows

What is a Workflow?

74 Workflows visible to you, out of a total of 74

nf-core/hlatyping

nf-core

Precision HLA typing from next-generation sequencing data.

Type: Nextflow

Creators: Christopher Mohr, Alexander Peltzer, Sven Fillinger

Submitter: WorkflowHub Bot

Created: 4th Jun 2024 at 11:33, Last updated: 11th Jun 2024 at 13:54

nf-core/crisprseq

nf-core

Pipeline for the analysis of crispr data

Type: Nextflow

Creators: mirpedrol , mirpedrol , Júlia Mir Pedrol, mirpedrol , mirpedrol , Laurence Kuhlburger

Submitter: WorkflowHub Bot

Created: 4th Jun 2024 at 11:32, Last updated: 11th Jun 2024 at 13:54

nf-core/ampliseq

nf-core

16S rRNA amplicon sequencing analysis workflow using QIIME2.

[![GitHub Actions CI ...

Type: Nextflow

Creators: Daniel Straub, Alexander Peltzer

Submitter: WorkflowHub Bot

Created: 4th Jun 2024 at 11:32, Last updated: 11th Jun 2024 at 13:54

nf-core/viralrecon

nf-core

Assembly and intrahost/low-frequency variant calling for viral samples

Type: Nextflow

Creators: Sarai Varona and Sara Monzon, Patel H, Varona S and Monzon S

Submitter: WorkflowHub Bot

Created: 4th Jun 2024 at 11:34, Last updated: 4th Jun 2024 at 11:34

nf-core/viralintegration

nf-core

Integration of viral sequences in genomic data

Type: Nextflow

Creators: Alyssa Briggs, Edmund Miller

Submitter: WorkflowHub Bot

Created: 4th Jun 2024 at 11:34

nf-core/taxprofiler

nf-core

Taxonomic classification and profiling of shotgun metagenomic data

Type: Nextflow

Creators: James A. Fellows Yates, Sofia Stamouli, Moritz E. Beber, Lauri Mesilaakso, Thomas A. Christensen II, Jianhong Ou, Mahwash Jamy, Maxime Borry, Rafal Stepien, Tanja Normark

Submitter: WorkflowHub Bot

Created: 4th Jun 2024 at 11:33

nf-core/spatialtranscriptomics

nf-core

Spatial Transcriptomics

Type: Nextflow

Creators: Sergii Domanskyi, Jeffrey Chuang, Anuj Srivastava

Submitter: WorkflowHub Bot

Created: 4th Jun 2024 at 11:33

nf-core/smrnaseq

nf-core

Small RNA-Seq Best Practice Analysis Pipeline.

Type: Nextflow

Creators: Phil Ewels <phil.ewels@scilifelab.se>, P. Ewels <phil.ewels@scilifelab.se>, P. Ewels, Chuan Wang <chuan.wang@scilifelab.se>, C. Wang <chuan.wang@scilifelab.se>, C. Wang, Rickard Hammarén <rickard.hammaren@scilifelab.se>, R. Hammarén <rickard.hammaren@scilifelab.se>, R. Hammarén, Lorena Pantano <lorena.pantano@gmail.com>, L. Pantano <lorena.pantano@gmail.com>, L. Pantano