Workflows
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Query
Created At
Updated At
Tool
FastQC7
BUSCO6
MultiQC5
SAMtools5
SCANPY5
Stacks5
QUAST4
Bandage3
Bwa-mem23
Minimap23
Trimmomatic3
BEDTools2
BWA2
fastp2
FASTX-Toolkit2
Flye2
Merqury2
Racon2
StringTie2
VSEARCH2
Biopython1
compute_sequence_length1
Cutadapt1
GenomeScope 2.01
gfastats1
ggplot21
HiFiAdapterFilt1
HISAT21
Medaka1
NanoPlot1
PEAR1
picard_samtofastq1
purge_dups1
RepeatMasker1
RepeatModeler1
seqtk1
STAR1
TransDecoder1
YaHS1
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Tag
Genomics10
Large-genome-assembly9
Metagenomics8
scRNAseq8
Assembly7
INDELs7
scalable7
TSI-annotation7
GATK46
Nextflow6
PBS6
SNPs6
Alignment5
Bioinformatics5
NCI5
variant_calling5
WGS5
FASTQ4
Gadi4
HiFi4
variant calling4
workflow4
DNA3
hifiasm3
illumina3
mapping3
MetaDEGalaxy3
NCI-Gadi3
QC3
rna3
rna-seq3
RNASEQ3
Transcriptomics3
Annotation2
BROAD2
BUSCO2
BWA2
cancer2
Flashlite2
genome2
genome_assembly2
Merqury2
Meryl2
ONT2
Quast2
SAMTools2
shotgun2
singularity2
Somatic2
trinity2
TSI2
whole genome sequencing2
10X1
abricate1
annotsv1
antimicrobial resistance1
bacterial-genomics1
BAM1
bash1
BBduk1
bbmap1
blast1
Bootstrapping1
BQSR1
braken1
BWA-mem1
container1
Conversion1
counts1
DE1
de novo1
DIAMOND1
differential expression1
differential_expression1
DNA-seq1
expression1
FAIR workflows1
FastQC1
GATK1
Germline1
global assemblies1
gpu1
GUCFG2galaxy1
HaplotyeCaller1
Hi-C1
HPC1
HTSeq1
human1
humann21
index1
Juicer1
kraken1
manta1
map1
model1
MultiQC1
Mutect21
nanopore1
NCI Gadi1
non-model1
parallel1
prokka1
purge_dups1
rare diseases1
referencegenome1
RSeQC1
salmon1
smoove1
snv1
STAR1
strandedness1
structural variants1
Supernova1
survivor1
TAD1
TELLSeq1
tiddit1
topologically associating domains1
transcriptome1
tumour1
VCF1
Virology1
Virus1
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Submitter
Anna Syme25
Sarah Williams14
Tracy Chew9
Georgina Samaha7
Johan Gustafsson6
Mike Thang3
Sarah Beecroft2
Valentine Murigneux2
Marco De La Pierre1
Richard Lupat1
Magdalena Antczak1
Ziad Al-Bkhetan1
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Team
Australian BioCommons45
Galaxy Australia30
QCIF Bioinformatics18
Sydney Informatics Hub16
Pawsey Supercomputing Research Centre2
Janis1
Space
Australian BioCommons72
Creator
Anna Syme24
Tracy Chew13
Georgina Samaha10
Rosemarie Sadsad9
Saskia Hiltemann6
Gareth Price4
Cali Willet4
Valentine Murigneux2
Mike Thang2
Ziad Al-Bkhetan2
Johan Gustafsson1
Sarah Beecroft1
Marco De La Pierre1
Richard Lupat1
Katherine Farquharson1
Nandan Deshpande1
Ian Brennan1
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Collection
BioCommons ‘Bring Your Own Data’ Expansion Project39
scRNAseq processing in galaxy8
TSI annotation workflows7
16S Microbial Analysis with mothur (on Galaxy Australia)6
HiFi genome assembly on Galaxy4
Topic annotations
Sequence assembly15
Population genomics9
Transcriptomics9
Whole genome sequencing9
Genetic variation8
Gene expression7
Bioinformatics5
Metagenomics5
Genomics4
DNA mutation2
Exome sequencing2
Gene transcripts2
Metagenomic sequencing2
Biomedical science1
DNA packaging1
DNA polymorphism1
Mapping1
Phylogenomics1
Structural genomics1
Structural variation1
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Operation annotations
Expression analysis7
Sequence clustering6
Sequencing quality control5
Variant calling5
De-novo assembly4
Sequence alignment4
Sequence assembly4
Taxonomic classification4
Variant filtering4
Sequence assembly validation3
Genome assembly2
Indel detection2
SNP detection2
Transcriptome assembly2
Conversion1
Differential gene expression profiling1
Gene expression profiling1
Genetic mapping1
Genome analysis1
Genome comparison1
Mapping1
Phasing1
Sequence assembly visualisation1
Sequence cutting1
Validation1
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72
Workflows visible to you, out of a total of 72
Stable
This is a Galaxy workflow that uses to convert the16S BIOM file to table and figures. It is part of the metaDEGalaxy workflow MetaDEGalaxy: Galaxy workflow for differential abundance analysis of 16s metagenomic data.
Stable
A porting of the Trinity RNA assembly pipeline, https://trinityrnaseq.github.io, that uses Nextflow to handle the underlying sub-tasks. This enables additional capabilities to better use HPC resources, such as packing of tasks to fill up nodes and use of node-local disks to improve I/O. By design, the pipeline separates the workflow logic (main file) and the cluster-specific configuration (config files), improving portability.
Based on a pipeline by Sydney Informatics Hub: ...