Trinity @ NCI-Gadi Version 1
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Download RO-CrateDescription: Trinity @ NCI-Gadi contains a staged Trinity workflow that can be run on the National Computational Infrastructure’s (NCI) Gadi supercomputer. Trinity performs de novo transcriptome assembly of RNA-seq data by combining three independent software modules Inchworm, Chrysalis and Butterfly to process RNA-seq reads. The algorithm can detect isoforms, handle paired-end reads, multiple insert sizes and strandedness.
Infrastructure_deployment_metadata: Gadi (NCI)
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Version 1 (earliest) Created 17th Aug 2021 at 05:44 by Tracy Chew
Added/updated 2 files
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Matthew Downton, Andrey Bliznyuk, Rika Kobayashi, Ben Menadue, Ben Evans
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Views: 3125 Downloads: 285
Created: 17th Aug 2021 at 05:44
Last updated: 7th Sep 2021 at 07:20
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https://orcid.org/0000-0003-2488-953X
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https://orcid.org/0000-0003-0419-1476
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Space: Australian BioCommons
Public web page: https://www.biocommons.org.au/
The Sydney Informatics Hub is a Core Research Facility of The University of Sydney. We work towards enabling excellence in data and compute intensive research. We provide support, training, and expertise in statistics, data science, artificial intelligence, bioinformatics, software engineering, simulation, visualisation, and research computing. We are creating reusable workflows for bioinformatics on Australia's national supercompute resources & commercial cloud, as an official node of the ...
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