clinicalmp-quantitation/main
v0.1

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Workflow Type: Galaxy

Clinical Metaproteomics 4: Quantitation

SEEK ID: https://workflowhub.eu/workflows/1177?version=1

Inputs

ID Name Description Type
Experimental-Design Discovery MaxQuant Experimental-Design Discovery MaxQuant design file
  • File
Input Raw-files Input Raw-files MSMS data
  • File[]
Quantitation_Database-For-MaxQuant Quantitation_Database-For-MaxQuant Input protein database
  • File

Steps

ID Name Description
3 MaxQuant Database searching toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant/2.0.3.0+galaxy0
4 extracting microbial Proteins extracting microbial Proteins Grep1
5 extracting microbial Peptides extracting microbial Peptides Grep1
6 extract proteins extract proteins Cut1
7 extract peptides extract peptides Cut1
8 Quantified-Proteins Quantified-Proteins Grouping1
9 Quantified-Peptides Quantified-Peptides Grouping1

Outputs

ID Name Description Type
Quantified-Proteins Quantified-Proteins n/a
  • File
Quantified-Peptides Quantified-Peptides n/a
  • File

Version History

v0.1 (earliest) Created 7th Oct 2024 at 16:32 by WorkflowHub Bot

Updated to v0.1


Frozen v0.1 0eb4332
help Creators and Submitter
Creators
Not specified
Additional credit

GalaxyP

Submitter
Tool
MaxQuant
License
Creative Commons Attribution 4.0 International
Activity

Views: 382   Downloads: 27   Runs: 0

Created: 3rd Oct 2024 at 03:03

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