taxonomic-rank-abundance-summary-table/main
v0.1

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Workflow Type: Galaxy

This workflow creates taxonomic summary tables for a specified taxonomic rank out of MAPseq's OTU tables output collection.

SEEK ID: https://workflowhub.eu/workflows/1296?version=1

Inputs

ID Name Description Type
OTU tables #main/OTU tables OTU tables.
  • array containing
    • File
Taxonomic rank #main/Taxonomic rank Choose a taxonomic rank for a dedicated taxonomic abundance summary table.
  • string

Steps

ID Name Description
2 Map parameter value toolshed.g2.bx.psu.edu/repos/iuc/map_param_value/map_param_value/0.2.0
3 Map parameter value toolshed.g2.bx.psu.edu/repos/iuc/map_param_value/map_param_value/0.2.0
4 Text reformatting toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1
5 Group Grouping1
6 Filter Tabular toolshed.g2.bx.psu.edu/repos/iuc/filter_tabular/filter_tabular/3.3.1
7 Text reformatting toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1
8 Column join toolshed.g2.bx.psu.edu/repos/iuc/collection_column_join/collection_column_join/0.0.3
9 Text reformatting toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1

Outputs

ID Name Description Type
Taxonomic rank summary table #main/Taxonomic rank summary table n/a
  • File

Version History

v0.1 (earliest) Created 7th Feb 2025 at 03:01 by WorkflowHub Bot

Updated to v0.1


Frozen v0.1 78b59f9
help Creators and Submitter
Creator
  • Rand Zoabi
Submitter
License
MIT License
Activity

Views: 161   Downloads: 31   Runs: 0

Created: 7th Feb 2025 at 03:01

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