taxonomic-rank-abundance-summary-table/main
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Workflow Type: Galaxy
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Tests This workflow creates taxonomic summary tables for a specified taxonomic rank out of MAPseq's OTU tables output collection.
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| OTU tables | #main/OTU tables | OTU tables. |
|
| Taxonomic rank | #main/Taxonomic rank | Choose a taxonomic rank for a dedicated taxonomic abundance summary table. |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | Map parameter value | toolshed.g2.bx.psu.edu/repos/iuc/map_param_value/map_param_value/0.2.0 |
| 3 | Map parameter value | toolshed.g2.bx.psu.edu/repos/iuc/map_param_value/map_param_value/0.2.0 |
| 4 | Text reformatting | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1 |
| 5 | Group | Grouping1 |
| 6 | Filter Tabular | toolshed.g2.bx.psu.edu/repos/iuc/filter_tabular/filter_tabular/3.3.1 |
| 7 | Text reformatting | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1 |
| 8 | Column join | toolshed.g2.bx.psu.edu/repos/iuc/collection_column_join/collection_column_join/0.0.3 |
| 9 | Text reformatting | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Taxonomic rank summary table | #main/Taxonomic rank summary table | n/a |
|
Version History
v0.1 (earliest) Created 7th Feb 2025 at 03:01 by WorkflowHub Bot
Updated to v0.1
Frozen
v0.178b59f9
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Views: 2298 Downloads: 3058 Runs: 0
Created: 7th Feb 2025 at 03:01
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