parallel-accession-download/main
View on GitHub
Download RO-Crate
Run on Galaxy
Workflow Type: Galaxy
Frozen
Frozen
Tests Downloads fastq files for sequencing run accessions provided in a text file using fasterq-dump. Creates one job per listed run accession.
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Run accessions | #main/Run accessions | Text file containing run accessions (starting with SRR, ERR or DRR), one per line. |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | Split accessions to collection | toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.5.2 |
| 2 | fasterq-dump | toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.1.1+galaxy0 |
| 3 | flatten paired output | __APPLY_RULES__ |
| 4 | flatten single end output | __APPLY_RULES__ |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Paired End Reads | #main/Paired End Reads | n/a |
|
| Single End Reads | #main/Single End Reads | n/a |
|
Version History
v0.1.14 (latest) Created 11th Jun 2024 at 03:01 by WorkflowHub Bot
Updated to v0.1.14
Frozen
v0.1.14448a45c
v0.1 (earliest) Created 23rd Jul 2021 at 10:18 by WorkflowHub Bot
Added/updated 12 files
Frozen
masterff682ec
Creators and Submitter
Tool
License
Activity
Views: 8331 Downloads: 1250 Runs: 0
Created: 23rd Jul 2021 at 10:18
Last updated: 6th Sep 2023 at 03:01
TagsThis item has not yet been tagged.
AttributionsNone
Related items
Advanced Teams list for this Workflow with search and filtering
IWC - Intergalactic Workflow Commission
Space: This Team is not associated with a Space
Public web page: https://github.com/galaxyproject/iwc
